<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00644

Description Uncharacterized protein
SequenceMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMLSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQQSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTSSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA
Length1265
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-0.785
Instability index74.48
Isoelectric point9.31
Molecular weight138977.91
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00644
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     539.62|      59|      59|     240|     298|       1
---------------------------------------------------------------------------
  106-  140 (50.02/ 6.49)	RQQVLPQQQQQQS...Q.........NSQ..QFLYHQ......QY..PQQP..LNK.......KLQ
  145-  198 (74.56/14.40)	SHTLMQPQIQQQP...Q...QQPNL..LQPNQLQSSQQS.G.MQT..SSVMpnMMQSAPLPGLQQN
  200-  239 (54.28/ 7.86)	QSSV....QQSTQ...PMMQQHPQSVLRPQQQ...QQQTVG.IHQ..QQ........TPMP.....
  240-  298 (118.66/28.63)	QQSVMPPQQQQQQ...QLMGQQPNTVNMQQSQLIGQQNNVGDMQQ..QQRL..LGQQSNLPNLQQQ
  301-  359 (84.67/17.66)	QQQQQQQQQQQQQ...QLMAQQ.NLSSMHHQQL.GPQSNVSGLQQqpQQQL..LGTQSGNSSMQTN
  367-  406 (49.77/ 6.41)	QQPKVPVQQQMQQsapNLL...PNQGQQQQSQ...........PQ..QQQM..MSQ......IQ..
  407-  446 (51.99/ 7.12)	....SQPTQLQQQ...LGLQQQPNP..LQR...........DMQQ..RLQA..SGQAS..ASLLQP
  690-  738 (55.67/ 8.31)	.NSVSAPQQASIN...NL.PSQ.SGVNMLQSNINALQSNSNMMQH..QH....LKQHQE.....QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     280.11|      51|      52|     741|     791|       2
---------------------------------------------------------------------------
  450-  502 (43.97/ 7.63)	.....................MDQ.QKQLYQPQRALPETSstslD..STH.QTGQangvdWQEEVYQKIKTMKEM.YLP
  503-  536 (40.88/ 6.48)	E.................LNEM.......YQK...............IAA.KLQQ.....HDSLPQQPKSDQLEKlKIF
  537-  593 (45.25/ 8.11)	KtmleriitflqvskSNILPGFKE.KLGSYEKQIVNFIST....N..RPR.KPVS.....SMQQQ.....GQLP....P
  741-  791 (93.26/26.04)	Q..............SQQLKQMQQ.RHMQFQKQQLMQQQQ....Q..QQH.QQQQ.....HQQQQHQQAKQQLPA.QLP
  794-  844 (56.75/12.41)	Q..............MPQLNQMNDvNDLKIR..QGMAVKP....GvfQQHlTSGQ.....RSAYSHQPLK..PGA.QFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.59|      24|      77|       2|      25|       5
---------------------------------------------------------------------------
    2-   25 (46.59/22.37)	QNQVHN.QGQSLPIPLSANQSQVRQ
   54-   73 (26.48/ 8.84)	...VSG.LSQS.PIPSVVGQTVNMQ
   80-  102 (35.52/14.92)	QNSGGNsMGQGVPSNLFAN.SQ.RQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     333.48|     109|     118|    1009|    1126|       6
---------------------------------------------------------------------------
  900-  960 (73.99/33.41)	..................................................................PSPM...PG.DSEKPISGISSLSNAGNIGHQ....QTSSAQAAAPS......lAIGTPGISAS.PLLAEFTGPDGA
  994- 1115 (159.91/106.38)	LSASVSDIGSVvsmiDRIA.GSApGNGsraavGEDLVamTKCRLQA....RNFITQDGSS.....GPRKM...RRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATS.......SIKRPRIEANhALLEEIREINQR
 1116- 1221 (99.58/49.90)	LIDTVVDISDE..daDPTAaGSA.GEG.....GEGTV..VKCSFSAvalsPNLKSQYASAqmspiQPLRLlvpTNYPNCSPI........LLDKFPVEISKEYEDLSVKAKSrfsislrSLSQP..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.97|      25|      55|     603|     629|       7
---------------------------------------------------------------------------
  603-  629 (39.76/23.64)	QSQISQGQPHDNqMNS....QIQSM...NlAGSM
  656-  687 (36.21/13.95)	QNMLNSVQPGPN.MDSgqgtSLSSMhqvN.AGSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00644 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSG
2) LQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTSSAQAAAPSLA
3) SSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQQSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDW
573
882
48
879
939
485










Molecular Recognition Features






MoRF SequenceStartStop




1) FLYHQQY
2) RKMRRYT
124
1051
130
1057