<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00642

Description Uncharacterized protein
SequenceMTSPAWLPPEVQQLTANAPISGKPVGGSLVASSTPIAPTSNGSDTATNDSISGPSQAKSVTATGGVIPQSSFSFQNSEGSGHSASSVINSNPSVPPGVSSFTYSASQTVVGYSPNQQFQPNMNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
Length978
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.800
Instability index51.63
Isoelectric point8.59
Molecular weight107239.10
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00642
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     414.42|      64|      64|     659|     722|       1
---------------------------------------------------------------------------
  582-  634 (59.87/30.98)	..............FKEMLK......erGVAPFSKWEKELPKIVFDPRFKA....IQSQSARRALFERY.VK..TRAEEE
  635-  704 (89.40/49.76)	RKekRAAQKAAIEGFKQLLE....evseDIDHSTDYQTFKKKWGSDPRFEA....LDRKDRELLLNERV.LPL.KRAAEE
  705-  770 (91.12/50.86)	KA..QAIRAAAASSFKSMLR.....ekgDITLSSRWSKVKDILRDDPRYKS....VRHEDREVIFNEYV.REL.K.AAEE
  771-  815 (54.02/27.26)	EA..ER.EAKARREEQEKL.........................KEREREM....RKRKEREEQEMERVrLKV.RR..KE
  816-  878 (59.62/30.82)	..........AVTSFQALLV....etikDPQAS..WTESRPKLEKDPQGRAtnadLDSSDREKLFREHI.KTLyERCAHD
  883-  940 (60.38/31.30)	LA..EVITAEAA........aqetedgkTVLNS..WSTAKRVLKPEPRYSK....MPRKEREALWRRHA.EEI.QR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     278.70|      43|      49|     215|     257|       2
---------------------------------------------------------------------------
   34-   68 (36.53/12.44)	.......TPIAPT...SNGSdtATN........DSI.....SGPS...QA.K...SV.TATG.GVIP
   89-  142 (43.82/16.32)	NSNPSVP.PGVSS...FTYS..ASQtvvgyspnQQF..QP.NMNKL..EA.VedaGLgSSTS.TNSQ
  143-  191 (42.14/15.43)	PVQASVRTFSDSTvatSSAT..ALS........TTTswMP.TIPSFstPPgL...FV.TPQ...TQA
  215-  257 (82.79/37.05)	GLRPSVPTPSAPS...NSGS..AIQ........HQI..YP.TYPSL..PP.I...GV.SPQG.PLLR
  262-  291 (42.85/15.80)	GVRPWLPFLP............................YPaAYPS....P.F...PL.PAHGmPNPS
  301-  334 (30.58/ 9.28)	GL.SSVRTAAATS...HS....AIP.......gHQL..VG.TSGNTeaPP.S...G...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     230.85|      57|      58|     390|     447|       3
---------------------------------------------------------------------------
  354-  383 (37.73/20.67)	..............EQLD....A..WTA....HKTDTGIVYYYNA............VTGE.STY.EK
  390-  447 (98.24/73.45)	EPdKVPVQPTPISMEHLT....GTDWAL....VTTNDGKKYYYNSKMKVSSWQIPSEVTEL.KKK.ED
  454-  508 (60.55/38.88)	Q..SVP..NTNIVIEK......GSN.AIslssPAVNTGGR..DATALRTSSMPGSSSALDLiKKKlQD
  511-  551 (34.31/18.30)	TP...TASPAPVSSAAATsesnGSKAVE....VTVKGLQNENTKDKLK....................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00642 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVR
2) EVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
3) FPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLD
4) IPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECI
5) MTSPAWLPPEVQQLTANAPISGKPVGGSLVASSTPIAPTSNGSDTATNDSISGPSQAKSVTATGGVIPQSSFSFQNSEGSGHSASSVINSNPS
6) YEKPAGFKGEPDKVPVQPTPISMEHLTGTD
7) YSPNQQFQPNMNKLEAVEDAGLGSSTSTNSQPVQASVRTFS
769
885
280
435
1
381
112
808
978
357
579
93
410
152










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQ
498
507