<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00641

Description Uncharacterized protein
SequenceMNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
Length857
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.872
Instability index51.88
Isoelectric point8.80
Molecular weight95189.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00641
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     356.29|      64|      64|     538|     601|       1
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  461-  520 (62.24/35.13)	.......FKEMLK..erGVA.PFS.KWEKELPKIVF.......DPRFKA....IQSQSARRALFERYVK..TRAEEE....RKekRAA
  521-  588 (97.66/59.64)	QKAAIEGFKQLLEevseDID.HST.DYQTFKKKWGS.......DPRFEA....LDRKDRELLLNERVLPL.KRAAEE....KA..QAI
  589-  652 (84.33/50.42)	RAAAASSFKSMLR.ekgDIT.LSS.RWSKVKDILRD.......DPRYKS....VRHEDREVIFNEYVREL.K.AAEE....EA..E..
  692-  766 (71.10/41.26)	RKEAVTSFQALLVetikDPQ.AS...WTESRPKLEK.......DPQGRAtnadLDSSDREKLFREHIKTLyERCAHDfrglLA..EVI
  767-  819 (40.95/20.39)	TAEAA...............aQETeDGKTVLNSWSTakrvlkpEPRYSK....MPRKEREALWRRHAEEI.QR...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     195.16|      42|     116|      21|      62|       2
---------------------------------------------------------------------------
   11-   56 (48.81/20.85)	....GL...................gsststnsQPVQA.SVR...TFSDSTVATSSA.TALSTTTSWMPTIPSF
   57-  102 (49.03/20.97)	STPPGL...................fvtpqtqaPPGLL.TLR........TKDTSSAfGDFYSSAGLRPSVPTP
  103-  174 (50.96/22.07)	SAPSNSgsaiqhqiyptypslppigvspqgpllRPPQM.GVRpwlPFLPYPAAYPSP.FPLPAHGMPNPSVSQI
  176-  212 (46.36/19.46)	AQPPGL................................sSVR...TAAATSHSAIPG.HQLVGTSGNTEAPPS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.94|      34|      42|     382|     418|       3
---------------------------------------------------------------------------
  382-  418 (43.86/36.62)	KKKLQD.SGTPTASPaPvSSAAATSESNGSKAvEVTVK
  426-  460 (56.08/32.62)	KDKLKDiNGDGTMSD.S.SSDSEDGETGPTKE.ECIIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.43|      12|      15|     653|     667|       4
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  653-  664 (19.61/14.38)	REAKARREEQEK
  670-  681 (20.82/ 6.51)	REMRKRKEREEQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00641 with Med35 domain of Kingdom Viridiplantae
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