<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00639

Description Uncharacterized protein
SequenceMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMLSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQQSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTSSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA
Length1251
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-0.793
Instability index74.80
Isoelectric point9.32
Molecular weight137441.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00639
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     584.70|      59|      59|     240|     298|       1
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  106-  140 (50.00/ 7.72)	RQQVLPQQQQ....QQS...Q.........NSQ..QFLYHQ......QY..PQQP..LNK.......KLQ
  145-  198 (73.62/16.89)	SHTLMQPQIQ....QQP...Q...QQPNL..LQPNQLQSSQQS.G.MQT..SSVMpnMMQSAPLPGLQQN
  200-  239 (54.28/ 9.38)	QSSV....QQ....STQ...PMMQQHPQSVLRPQQQ...QQQTVG.IHQ..QQ........TPMP.....
  240-  298 (118.44/34.29)	QQSVMPPQQQ....QQQ...QLMGQQPNTVNMQQSQLIGQQNNVGDMQQ..QQRL..LGQQSNLPNLQQQ
  301-  359 (84.46/21.10)	QQQQQQQQQQ....QQQ...QLMAQQ.NLSSMHHQQL.GPQSNVSGLQQqpQQQL..LGTQSGNSSMQTN
  367-  406 (49.77/ 7.63)	QQPKVPVQQQ....MQQsapNLL...PNQGQQQQSQ...........PQ..QQQM..MSQ......IQ..
  407-  446 (51.99/ 8.49)	....SQPTQL....QQQ...LGLQQQPNP..LQR...........DMQQ..RLQA..SGQAS..ASLLQP
  690-  738 (55.31/ 9.78)	.NSVSAPQQA....SIN...NL.PSQ.SGVNMLQSNINALQSNSNMMQH..QH....LKQHQE.....QQ
  742-  775 (46.84/ 6.49)	SQQLKQMQQRhmqfQKQ...QLMQQQ......................Q..QQQ....HQQQ.....QHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.79|      34|      51|       5|      41|       2
---------------------------------------------------------------------------
    5-   38 (58.02/21.21)	VHNQGQSLPIPLSANQSQVRQQL..LSQ.NIQNNMLS
   54-   85 (39.96/10.07)	VSGLSQS.PIPSVVGQTVNMQNMsgISQ.NSGGN...
  585-  617 (50.81/13.94)	MQQQGQ.LP.PTHMHSMQQQQSQ..ISQgQPHDNQMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     224.40|      60|      62|     789|     849|       3
---------------------------------------------------------------------------
  789-  843 (85.99/33.37)	..............QLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQrSAYSHQP.LKPGAQF
  844-  896 (64.90/21.19)	PIS.SPQllqtaspQIPQHSSPQVDQQN......LLQSIT.KSGTPLQSVNS.........PfVVPSPST
  897-  954 (73.51/25.02)	PMApSPM...pgdsEKPISGISSLSNAGNIGHQQTSSAQAAAPS.....LAIGT.PGISASP.LL..AEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.31|      17|      17|     487|     503|       4
---------------------------------------------------------------------------
  500-  519 (21.97/11.10)	YLPE..lNEMYQKIaaKLQQHD
  520-  539 (21.33/10.54)	SLPQqpkSDQLEKL..KIFKTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.52|      14|      15|     974|     988|       6
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  974-  988 (20.34/11.64)	SMSPKaLSASVSDIG
  992- 1005 (21.17/ 8.50)	SMIDR.IAGSAPGNG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00639 with Med15 domain of Kingdom Viridiplantae
Unable to open file!