<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00638

Description Uncharacterized protein
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
Length996
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-1.010
Instability index54.81
Isoelectric point6.60
Molecular weight112510.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00638
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.10|      38|      38|     198|     235|       1
---------------------------------------------------------------------------
  198-  235 (76.58/46.60)	TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERA
  239-  276 (75.52/45.86)	TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     507.85|      65|      66|     445|     509|       2
---------------------------------------------------------------------------
  388-  443 (57.08/30.06)	...EAKNNLSNMS.ASD.L.VG.......AS...DKVPPPVTEETRKDAV..R..GEK....VSDALE...EKTvEQEHF.AY.A
  445-  509 (97.26/56.46)	KL.EAKNAFKALL.ESA.N.VG.......SDWTWDQALRAIINDRRYGAL..RTLGER.KTAFNEYLG...QKK.KQDAE.ER.R
  511-  580 (79.78/44.97)	KLkKARDDYKKMLeESV.E.LT.......SSTRWSKAVTMFENDERFKAL..ERERDR.KDMFDDHLDelkQKE.RAKAQ.EE.R
  586-  644 (70.13/38.63)	.......EYRKFL.ESC.DfIK.......ANTQWRKVQDRLEADERCSRL..DKM.DR.LEIFQEYLN...DLE.KEEEE.QR.K
  655-  726 (63.65/34.38)	R..KNRDEFRKLM.E.A.D.VAlgtltakTNWR.DYCIK.VKDSPPYMAVasNTSGSTpKDLFEDVVE...ELQ.KQFQE.DKtR
  728-  785 (61.88/33.22)	.....KDAVK..L.RKI.T.LS.......STWTFEDFKASVLEDATSPPI..SDV.NL.KLIFDDLLI...KVK.EKEEK.EA.K
  787-  853 (78.07/43.85)	RK.RLEDEFFDLL.CSVkE.IS.......ATSTWENCRQLLEGSQEFSSI..GDESIC.RGVFDEFVT...QLK.EQAKDyER.K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      73.81|      17|      17|     862|     878|       3
---------------------------------------------------------------------------
  862-  876 (19.19/ 8.32)	......EKEREERDR...RKLKQG
  877-  895 (18.62/ 7.81)	RD.kerAREREKEDH...SK.KDG
  913-  933 (19.04/ 8.19)	KDndkkHRKRHQSAH...DSLDEN
  935-  957 (16.96/ 6.35)	KD.rskNPHRHNSDRkkpRRLAST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     115.41|      19|      21|      56|      74|       4
---------------------------------------------------------------------------
   34-   53 (24.23/ 8.10)	LIMNAGfPSQPLQPPFRPLM
   56-   74 (40.43/17.66)	LPARPG.PPAPSHVPPPPQV
   91-  108 (27.86/10.24)	LP.RPN.VQALSSYPPGLGG
  113-  129 (22.89/ 7.30)	VAA.SY.TFAPSSYGQP.QL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.55|      19|      21|     337|     357|       5
---------------------------------------------------------------------------
  317-  333 (17.14/ 6.35)	....EVIVSSPVAV.VPIIAAS
  337-  357 (26.91/21.92)	PAlvSVPSTSPVIT.SSVVANA
  361-  380 (24.50/13.30)	PK..TVDAIAPMIDvSSSIGEA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00638 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
2) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
3) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLG
4) QLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
847
398
1
128
996
430
107
201










Molecular Recognition Features






MoRF SequenceStartStop




NANANA