<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00636

Description Uncharacterized protein (Fragment)
SequenceMANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQAKENERKRKEEK
Length864
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.736
Instability index53.88
Isoelectric point5.80
Molecular weight96662.79
Publications









Function






Annotated function


GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.93|      15|      16|     309|     323|       1
---------------------------------------------------------------------------
  309-  323 (24.16/12.06)	VTASPNADISSSTVQ
  346-  360 (18.77/ 7.80)	VSASSASPVIASSVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.76|      17|      17|     560|     576|       2
---------------------------------------------------------------------------
  560-  576 (30.71/21.21)	ER.....DRRDLFDDHLEELRQ
  578-  595 (18.15/ 9.31)	ERakaqeERR....QHLIEYRQ
  660-  672 (14.90/ 6.24)	ER.....KNRDEFRKLLE....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.71|      38|      39|     205|     242|       3
---------------------------------------------------------------------------
  205-  242 (76.73/57.37)	DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD
  246-  283 (74.99/55.89)	DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     135.77|      18|      18|      17|      34|       4
---------------------------------------------------------------------------
   17-   34 (36.31/18.37)	PAPQSQQYVPVASQHFP..P
   47-   57 (19.26/ 6.43)	PSQNMQ.......PQFP..Q
   63-   76 (27.87/12.46)	PARPGQ...P.APSHGP..P
   82-   99 (27.17/11.97)	PLPNAQQSNHIASGSSL..P
  139-  158 (25.18/10.58)	NVNTGNQYQPMSQMHVPsnP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     226.70|      60|      66|     730|     794|       6
---------------------------------------------------------------------------
  496-  534 (18.27/ 6.20)	.........................................KQAFNEYLGQRKKQEAEERRfKLKKaredykkmLEE...SV.....E
  603-  653 (60.03/37.93)	IKASTQWRkvqdrlEAD....ERCSRLEKIDRLEI.........FKEYIIDL.EKEEEEQR.KIQK......................
  742-  809 (87.39/64.72)	ISLSSTWT......FED....FKASILEDVTSPPISDVNI.KLVFDDLLERVKEKEEKEAK.KRKR........LADdffALlcsikE
  810-  861 (61.01/38.70)	ISASSAW........EDciqlFEGS..REFSS..IGEESIcREIFDEYVTQLKEQAKENER.KRK.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.30|      11|      39|     334|     344|       7
---------------------------------------------------------------------------
  334-  344 (18.77/10.77)	PIIAASSIQPA
  406-  416 (14.53/ 6.59)	NVVAAAVEVPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.28|      10|      23|     105|     114|      10
---------------------------------------------------------------------------
  105-  114 (18.54/ 8.85)	APTSYASSLG
  127-  136 (20.73/10.71)	APSSYGQPQG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00636 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASS
2) IPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASP
3) MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFP
4) YGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDW
35
271
1
131
112
313
33
206










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNK
255
262