<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00633

Description Uncharacterized protein
SequenceMTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
Length1136
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.538
Instability index45.17
Isoelectric point7.40
Molecular weight127704.44
Publications









Function






Annotated function


GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00633
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     756.93|     248|     697|     135|     403|       1
---------------------------------------------------------------------------
  135-  403 (384.90/312.28)	HTTEAGQIDESAEVLAnKIDDDEILETIDVDQIVMEHYHSScTPKPSISRLPSITPN.AGNDKFARQDeTCL..PPELCSicnhgCKLG...LCPETSSHIQ.....DMKDMLIAISNElLDnaTNLSPAQTEKLRQERLQLSKQI.QLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQVHLYNES...EGYGNWNSSSVSFSSVDRlGVSSYPVEREPfipkiikvNYIEGSNDQKWSSWDFPWTKKLEANNKKV.FGNHSfRPNQREIIN
  834- 1097 (372.03/244.95)	HRHETLSLHGAGKHLA.KSEASRILRHLVIEDFLMEEVKKS.DVYGSVSSVLKVNQSkAHNLIIGRQN.VVLrfPSAINS.....TKLSksdVTPAKGSLLSgklspSRNDTPSQPQNE.VD..LNLSAKLYSSLRMLRTLLVKEAgEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIEStikEFYKTDKNGSSSNDSNDS.GKRRRDENEAP........NANKGDDDDFTKSTARSKKRASKSQNKTVeVINHN.EPDSYECVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.52|      21|      24|       9|      31|       2
---------------------------------------------------------------------------
    9-   31 (26.77/21.43)	PRLhSAEVEKAwHTLSSLQISRR
   36-   56 (38.75/19.41)	PGL.STPVEHS.DNDASHNVSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.40|      13|      26|      65|      78|       3
---------------------------------------------------------------------------
   65-   78 (21.08/18.27)	GSkFSEPMNNRQKG
   93-  105 (24.32/15.59)	GS.FHLSNNVRDAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.12|      25|      37|     745|     769|       4
---------------------------------------------------------------------------
  745-  769 (45.72/35.41)	ENLLRMVSYCENDV.D.CRRLLQLVHF
  783-  809 (32.40/22.79)	DNCSKIKSFIEKDVtDtAKKLVELVKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00633 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNE
2) YIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNV
3) YVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
1026
33
1106
1089
85
1136










Molecular Recognition Features






MoRF SequenceStartStop




1) GRVLPRWSMFSENR
2) YEYVYEM
1123
1104
1136
1110