<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00632

Description Uncharacterized protein
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
Length1029
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.997
Instability index56.04
Isoelectric point6.76
Molecular weight116119.19
Publications









Function






Annotated function


GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00632
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.83|      34|      38|     231|     268|       1
---------------------------------------------------------------------------
  231-  261 (56.90/33.12)	......TDWKEHTSADGRRYYF..NKRTRVSTWDKPFEL
  266-  302 (61.12/42.74)	ERAdasTDWKEFTSPDGRKYYY..NKVTKQSKWSLPDEL
  303-  330 (25.81/ 7.38)	KLA...REQAEKASIKGTQSETspNSQTSIS........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     176.02|      30|      30|     933|     962|       3
---------------------------------------------------------------------------
  907-  928 (31.80/14.27)	KQGRDKERAR........EREKEDHS..KKDG
  929-  945 (29.39/12.60)	AD..........S...DHDDSAENDS..KRSG
  946-  972 (44.90/23.36)	KDNDKKHRKRHQSAHDSLD...ENEK..DRSK
  977- 1003 (35.27/16.68)	HNSDRKKPRRLASTPES.....ENESrhKRHR
 1004- 1029 (34.66/16.26)	RDN..RNGSRKNGDHEDLEDGEYGGE..SR..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     488.83|      65|      65|     478|     542|       4
---------------------------------------------------------------------------
  421-  467 (53.01/28.09)	...EAKN..NLSNMS.ASD.L.VG.......AS...DKVPPPVTEET.....RKDAV..R..GEK....VSDAL...........EEK.T
  478-  542 (99.39/59.19)	KL.EAKN..AFKALL.ESA.N.VG.......SDWTWDQALRAIINDR.....RYGAL..RTLGER.KTAFNEYLG...QKKKQDAEER.R
  544-  613 (80.65/46.62)	KLkKARD..DYKKMLeESV.E.LT.......SSTRWSKAVTMFENDE.....RFKAL..ERERDR.KDMFDDHLDelkQKERAKAQEE.R
  615-  677 (59.48/32.43)	.....RNiiEYRKFL.ESC.DfIK.......ANTQWRK.....VQDRleadeRCSRL..DKM.DR.LEIFQEYLN...DLEKEEEEQR.K
  688-  759 (65.13/36.21)	R..KNRD..EFRKLM.E.A.D.VAlgtltakTNWR.DYCIK.VKDSP.....PYMAVasNTSGSTpKDLFEDVVE...ELQKQFQEDKtR
  761-  818 (62.71/34.60)	.....KD..AVK..L.RKI.T.LS.......STWTFEDFKASVLEDA.....TSPPI..SDV.NL.KLIFDDLLI...KVKEKEEKEA.K
  820-  879 (68.45/38.44)	RK.RLED..EFFDLL.CSVkE.IS.......ATSTWENCRQLLEGSQ.....EFSSI..GDESIC.RGVFDEFVT...QLKEQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     265.75|      30|      31|      74|     103|       5
---------------------------------------------------------------------------
   16-   35 (32.61/12.25)	.....PHQ..PPMVGSMDP.P.RGFGPP......I
   36-   61 (37.88/15.31)	PSQyrPLV..PA......PQP.QHYVPMASQHFQP
   74-  103 (65.01/31.04)	PSQ..PLQ..PPFRPLMHPLP.ARPGPPAPSHVPP
  104-  121 (27.28/ 9.16)	PPQ............VM.SLPnAQPS....NHIPP
  125-  153 (33.28/12.64)	PRP..NVQalSSYPPGLGGL..GRP..VAASYTFA
  154-  181 (37.25/14.94)	PSS..YGQ..PQ...LIGNVNiGSQQPMSQMHVPS
  198-  223 (32.43/12.14)	SST..PVQ..PT.DEQMAATT.A..SAPLPTLQP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.29|      19|      21|     370|     390|       6
---------------------------------------------------------------------------
  350-  366 (17.27/ 6.73)	....EVIVSSPVAV.VPIIAAS
  370-  390 (26.71/22.66)	PAlvSVPSTSPVIT.SSVVANA
  394-  413 (25.31/14.42)	PK..TVDAIAPMIDvSSSIGEA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00632 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
2) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
3) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPG
4) QLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
880
431
1
161
1029
463
138
234










Molecular Recognition Features






MoRF SequenceStartStop




NANANA