<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00629

Description Uncharacterized protein
SequenceMEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Length565
PositionHead
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.710
Instability index58.79
Isoelectric point9.16
Molecular weight62509.50
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00629
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     664.78|     174|     182|     174|     355|       1
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   12-  172 (150.53/52.99)	QQQQQQQQlvppQPVAVERLNQAVVQQLnleAVKT..RAISL..F..KAISRI..LEDFDAYARTNTtpKWQDILGQYSMVNLELFNIV.DEI....RKVSKAfvvhpknvnaenatiLPVMLSSkLLPemeIDDN..........SKREQLLlgMQNLP........IPS.......QIEKLK.SRIDMIG..AACESAEK.....................................
  174-  331 (228.14/100.53)	...............................LADT..RKAYC..FGTRQGPQI..LPTLDKGQALKI..QEQENLLRAAVNSGEGLRLP.GDQ....RQMTPA...............LPMHLVD.LLP...VGDG......VHTFSDASGMY..MKNTPPLSSNS..IGN.......QGNLLQASGAQLIGRSAASPSAATSATSfDNTTASPvpyANSPRS.gtNMMntPSPQQQQQ
  332-  516 (231.38/87.40)	QQQQQQQQ....QQQQRQKMMQLPHQQQ..lLAQQqfRQSQMqgLGQNQMSQLhdLQGQQKFQQLHG..QHQMQF.....SQ......PmGHQqfqgRQLASG...............HVQHGIG.QSQ...LGQGnqlnrhLSQFSGAANSA..LFNAAQGTSNSqmIPNmsatvssQ.SLLPRMQFGLAGNNPQR.SHASQMLS.DQMFNMG...ASNPGS....MM....PIQQQQ
  517-  551 (54.74/15.08)	QQQQQQHN....TQGAFGN.MQ.PNAQN...................................................................................................................................................................................................lqsNM...VALQNAQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00629 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
249
565










Molecular Recognition Features






MoRF SequenceStartStop




NANANA