<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00626

Description Uncharacterized protein
SequenceMVMITDLSASLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGTFQRYRNLTWEEIESATLSFSENLRIGMGGYGTVYKGTFHHTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHGCLVYEYMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKEVADRARDTVPSVHPAPPNHFICPILKEVMNEPCVAADGYTYDRKAIEEWLQENDKSPITDLPLPNKNLLPNYTLLSAILDWKSK
Length757
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.483
Instability index49.10
Isoelectric point5.93
Molecular weight84637.81
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00626
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.27|      13|      15|     137|     151|       1
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  137-  149 (23.16/24.14)	SIGSTKDDSS..DTG
  153-  167 (18.11/ 6.36)	SSSSSHNSSSqtDLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.92|      14|      15|     339|     352|       2
---------------------------------------------------------------------------
  333-  349 (17.84/10.71)	LAKqekKKYETARREAE
  350-  366 (19.08/11.98)	CARasaEKEAAQRQEAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.30|      10|      30|     274|     284|       3
---------------------------------------------------------------------------
  274-  284 (12.08/12.77)	VNfELEKLRIE
  306-  315 (18.21/12.10)	VN.DLNKCKLE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.67|      19|     109|     387|     408|       4
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  387-  408 (26.88/26.88)	FQRYRnLTWEeiESATLSFSEN
  499-  517 (35.79/22.46)	FERYR.IAWE..VASALAFLHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.74|      69|     594|       1|      76|       5
---------------------------------------------------------------------------
    1-   76 (108.29/110.97)	MVMITDLSA..SLAIGHPVGNFIPieqvRDDVA....AaykQEEKW..KTDRLLLPFRNMCAQ..R..RVEVEVKVIESDDVAKAIAD
  596-  676 (89.45/72.73)	MVILQLLTAkpAIAITHKVETAID....EDNLAeildA...QAGDWpiKETKELAALGLSCAElrRkdRPDLKNQVLPVLERLKEVAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.84|      15|      15|     223|     237|       7
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  223-  237 (26.53/15.74)	SSSCLSGPEVRQTVS
  239-  253 (28.31/17.26)	SSSYRSMETENQDWS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00626 with Med32 domain of Kingdom Viridiplantae
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