<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00625

Description Uncharacterized protein
SequenceMEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Length563
PositionHead
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.700
Instability index59.10
Isoelectric point9.16
Molecular weight62267.27
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00625
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     268.03|      73|     317|       1|      83|       1
---------------------------------------------------------------------------
   23-   83 (88.21/23.94)	PQPVAVERLNQAVVQQLNLEAVKTRAISLFK..AISRI..LEDFDAYARTNTTPKWQDILGQYSM....................................................
  342-  409 (94.83/29.22)	QQR...QKMMQLPHQQQLLAQQQFRQ.SQMQ..GLGQMsqLHDLQGQQ......KFQQLHGQHQM.....................................qfSQPMGHQQfQGRQ
  416-  521 (84.99/26.96)	QHGIGQSQLGQG..NQLN......RHLSQFSgaANSAL..FNAAQGTSNSQMIPNMSATVSSQSLlprmqfglagnnpqrshasqmlsdqmfnmgasnpgsmmpIQQQQQQQ.QQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.47|      16|      18|     222|     239|       3
---------------------------------------------------------------------------
  222-  237 (31.59/23.02)	LP.GDQ.RQMTPALPMHL
  241-  258 (22.88/ 8.00)	LPvGDGvHTFSDASGMYM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.18|      14|      14|     289|     302|       4
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  289-  302 (24.82/16.08)	ASP.SAATSATSFDN
  305-  319 (23.36/14.68)	ASPvPYANSPRSGTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.74|      15|      18|     526|     540|       5
---------------------------------------------------------------------------
  526-  540 (29.64/15.24)	AFGNMQ...PN.AQNLQSN
  543-  561 (19.10/ 6.77)	ALQNAQqnhPNfAQQRQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.27|      15|      65|     203|     220|       6
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  203-  220 (21.31/16.72)	IQEQENLLRAavnSGEGL
  269-  283 (26.95/13.47)	IGNQGNLLQA...SGAQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00625 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
249
563










Molecular Recognition Features






MoRF SequenceStartStop




NANANA