<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00623

Description Uncharacterized protein
SequenceMEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Length560
PositionHead
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.699
Instability index58.24
Isoelectric point9.16
Molecular weight61920.87
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00623
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     272.55|      73|     317|       1|      83|       1
---------------------------------------------------------------------------
   23-   83 (89.11/23.96)	PQPVAVERLNQAVVQQLNLEAVKTRAISLFK..AISRILEDFDAYARTNTTPKWQDILGQYSM....................................................
  342-  406 (98.58/30.15)	QQR...QKMMQLPHQQQLLAQQQFRQ.SQMQ..GLGQ.LHDLQG......QQKFQQLHGQHQM.....................................qfSQPMGHQQfQGRQ
  413-  518 (84.85/26.74)	QHGIGQSQLGQG..NQLN......RHLSQFSgaANSALFNAAQGTSNSQMIPNMSATVSSQSLlprmqfglagnnpqrshasqmlsdqmfnmgasnpgsmmpIQQQQQQQ.QQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     251.93|      59|     216|     262|     335|       3
---------------------------------------------------------------------------
  149-  194 (64.60/25.41)	..IPSQIEKLK....SRIDMIG..AACESAEKVLA..DTRKA.......YCFGTRQGPQILPT...
  201-  263 (87.58/42.83)	LKIQEQENLLRAavnSGEGL..RLPGDQRQMTPALPMHLVDLLPVGdgvHTFSDASGMYMKNTP.P
  267-  326 (99.75/59.84)	NSIGNQGNLLQA...SGAQLIGRSAASPSAATSATSFDNTTASPVP...YANSPRSGTNMMNTPsP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00623 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
249
560










Molecular Recognition Features






MoRF SequenceStartStop




NANANA