<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00613
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDGRVVRGVQRAALEQWSEFIAKSLSHRIDPEKFESYVPFLQAKHPLPPVAVADLFLRPQPHNHESLDPRVPRYLQVLSDLNYIDTASILKSLYRYSTSRAHSRDTTQPTTGEAQRSNLPRWGSSYAAEEVMFYRLTKSVAQGTAIQNTGTGLEIANIMAKWIALFTDAATAFTVDVMGQLHNSQVREEMESARAAFVALLLGVCENQVVLKALSKPEAQGTRKALSESLANFVPTIMQSAGPIATRLDMFRTSTLAGFEPVDEQKNKSNAEIEDLFDPTVALDNFVISELPIVNSRAGLYIYLNAALVGRPLIDDLAIFNYLNNRYQGDVQSTTVDLILASFDVLANAASRNEGNQAAHLLRSFLMNKLPILIESLSKHMYGPVNAEYCITEALGRVDTTTFPTLSSMFDETRSNNPFTDSVREEFCWACCLHGLVRESSIETLLGETPYQSLPAGGRYVKENLVAECLADQERMQALIGELDNKDGNAGAVCQALTEVMGQLCRNKETMSLKLLCSQLAQKPLSLDVMLMFEKPGTILHPLCDLLDNWKYDEDQGEYQPVYEEFGSILLLVMAFAYRYGLSASDMGVVSPDSFVAKLLGQGHQSRPLDELSDQEKGHLNGWIHGLFDSEAGGLGDELMSSCPPQDFYLLVSTLFQNIVLAFSTGHLAEESLRGGIEYLVDTFLLPSLVVAITYLANSLWVERSDCQKAIVRVLNSVLAPTSISNEAQAMLTSVMNIVAKPLEHSLRAYQRSDPKSQEVEPLLKAIKDSIPLSRRTGAADHTELDAWSLGGFSNSIRQTLQQLVQWSIHPTMDRMPPAYTHRQMLVALKLLGAKRLLQLLYEDIRQQTDTGSGSIIYDVATAIVCAPDVVNTPPNPVNFLDNSGNMPAPVQRKLTLREVLKSDAEDCKRLQKTDINLAEIVVRLHRKVESQMAVSQAQAIQADTMLQTDLGLGLDAGAGSLDDAMAAAAANVGQGDGMSVDNVSLDLGLGGVGGDMGLGGSSNNGGGSLDLGTDDIFGALGAGDDFQWDNMDLS |
Length | 1035 |
Position | Tail |
Organism | Colletotrichum sublineola (Sorghum anthracnose fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum>
Colletotrichum graminicola species complex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.112 |
Instability index | 40.91 |
Isoelectric point | 4.85 |
Molecular weight | 113218.25 |
Publications | PubMed=24926053
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP00613
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.50| 16| 34| 933| 966| 1
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933- 960 (17.40/28.54) MAVSQaqaiqadtmLQTDLGLGldaGAG
979- 994 (30.09/11.00) MSVDN.........VSLDLGLG...GVG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.89| 20| 26| 494| 517| 2
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496- 517 (30.86/29.80) ALT......EVMgqLCRNKETMSLKLLC
519- 544 (32.03/15.01) QLAqkplslDVM..LMFEKPGTILHPLC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.90| 22| 25| 230| 253| 3
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230- 251 (39.24/26.36) LANFVPTIMQSAGPIATRLDMF
256- 277 (37.66/18.66) LAGFEPVDEQKNKSNAEIEDLF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.86| 14| 26| 317| 330| 4
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317- 330 (26.83/16.71) LAIFNYLNN...RYQGD
340- 356 (17.04/ 8.01) LASFDVLANaasRNEGN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 35.13| 12| 26| 686| 698| 6
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686- 698 (16.32/13.70) LPSlVVAITYLAN
715- 726 (18.81/10.29) LNS.VLAPTSISN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 64.06| 19| 26| 439| 464| 8
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439- 457 (31.94/28.78) ESSIETLLGETPYQSLPAG
473- 491 (32.12/12.84) QERMQALIGELDNKDGNAG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.28| 23| 26| 110| 132| 9
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110- 132 (39.65/27.71) TTGEAQRSNLPRWGSSYAAEEVM
137- 159 (36.63/25.00) TKSVAQGTAIQNTGTGLEIANIM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 91.61| 20| 26| 610| 629| 10
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610- 629 (36.73/22.08) DEL.SDQEKGHLNGWIHGLFD
637- 657 (28.64/15.58) DELmSSCPPQDFYLLVSTLFQ
666- 682 (26.24/13.64) GHL.AEE...SLRGGIEYLVD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.84| 23| 37| 375| 398| 11
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375- 398 (37.49/27.71) ESLSKhMY..........GPVNAEYCITEAL.GRV
404- 437 (33.35/19.17) PTLSS.MFdetrsnnpftDSVREEFCWACCLhGLV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.52| 28| 32| 28| 55| 12
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28- 55 (50.89/35.48) RIDPEKFES...YVP.FLQAKHPLPPVAVADL
58- 89 (41.63/27.59) RPQPHNHESldpRVPrYLQVLSDLNYIDTASI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.32| 16| 19| 741| 758| 14
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743- 758 (27.95/20.17) LEHSLRAYQRSDPKSQ
760- 775 (25.37/10.56) VEPLLKAIKDSIPLSR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.85| 14| 37| 801| 814| 15
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801- 814 (24.94/14.55) LQQLVQWSIHPTMD
837- 850 (18.92/ 9.28) LLQLLYEDIRQQTD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.92| 15| 32| 555| 571| 16
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555- 571 (23.12/19.14) DQGEYQPvyEEFGSILL
586- 600 (25.79/14.09) DMGVVSP..DSFVAKLL
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