<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00590

Description U-box domain-containing protein kinase family protein isoform 2
SequenceMELLNPAHPPHQDPNRDPISGLSFRRQVDRPGSTQLPEIAEEAGGVGAGEKDKVFVAVGKSVEKAVNLLRWTLRRFGGKDICLLHVHQPSPLIPTLLGKLPASQANGEVVSAYRREEKEELRKLLEHYSSFCGKLKVKTSIITIEADQVHKGIVELVNRHTIRNLVMGAIPENCMRIKKNSSKACYAARNAPCFCDIWFVNKGKLVWMREASEEPSSLPPVGQAKAAIAQMLRSNSLPHTKGDSLVHPENIHSKSSRSIPFVGTTQLTETEPAHMDVSVSPTLSSFATKFSRPYYQSLSSPSCTNTGSECASSETRWSLDSYSKDEEESLYSWLREVSMEAEASRNGALAESLKCQELESEAMEAINKLKDFESARFREVKLRKEAEEALRTTLQEQEKLVNEKQEVTIELQKTMRNVALLNSRAQEANRRHDEVAGELKLIQASIATLRQEKQRIRQQKMEAVRWLERWRSHGQAGVTTCNGFIGLVEDFPELAEFSLADVQTATCNFSESFKIGKGGHGCVYKGEMLGRTVAIKKLYPHNMQGQSEFQQEAQLLSKLQHPHLVTLLGVCPEAWSLVYEYLPNGSLQGRLFRKTSVSPLTWKTRARIVAEISSALCFLHSTKPEKIVHGDLKPENILLDSELSCKICDFGISRLVTEDTLYCPSFRRSTEPKGAFPYSDPEFQRIGVLTPKSDIYAFGLIILQILTGRPPVGLVGEVRKAVSCGKLASILDTSAGEWPMFVARRLADLGLQCCELCGRDRPDLKPSLVRELGQLHVSVERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRDWLENGRESSPMTNLKLSHLNLTPNHAIRQAIQDWLCRA
Length853
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-0.368
Instability index52.38
Isoelectric point7.75
Molecular weight95360.03
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00590
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     290.40|      93|     134|     531|     634|       1
---------------------------------------------------------------------------
  531-  634 (142.71/127.09)	RTVAIKKLYPHNmqgQSEFQQEAQLLSK..LQHPHLVTL..LGVCPEAwSLVYEYLPNGSLqGRLFRKTSVSPLTWKT.RARIVAEISSALCFL.HSTKPekivhgDLKP
  668-  766 (147.69/99.23)	RSTEPKGAFPYS...DPEFQRIGVLTPKsdIYAFGLIILqiLTGRPPV.GLVGEVRKAVSC.GKLASILDTSAGEWPMfVARRLADLGLQCCELcGRDRP......DLKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.86|      39|      40|     353|     391|       2
---------------------------------------------------------------------------
  353-  391 (63.42/40.06)	LKCQE.LESEAMEAINKLKDFES..ARFREVK..LRKEAEEALR
  394-  430 (45.90/27.07)	LQEQEkLVNEKQEVTIELQ......KTMRNVA.lLNSRAQEANR
  434-  465 (23.55/10.49)	............EVAGELKLIQAsiATLRQEKqrIRQQKMEAVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.51|      65|     261|       4|      71|       3
---------------------------------------------------------------------------
    4-   71 (104.50/77.91)	LNPAHPPHQDPNRDPISGlSFRRQVDRPGSTQL..PEIAEEAGGVGAGEKDKVFVAVGKSVEKavNLLRW
  267-  333 (110.01/71.95)	LTETEPAHMDVSVSPTLS.SFATKFSRPYYQSLssPSCTNTGSECASSETRWSLDSYSKDEEE..SLYSW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00590 with Med32 domain of Kingdom Viridiplantae
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