<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00578

Description "U-box domain-containing protein kinase family protein, putative isoform 1"
SequenceMSVASASSGGATPKMTTVAVAVKGGASGGSGSRRAVRWAVENLKADRFVLVHVMPAVTSVPTPSGDRIPITEMDENVVAMYVQEVKLKFEEVFIPFKKLFKTRKMETLVLEDDNPAAALLRYISEFGINTLVLGSYSSNCITRKLKGTGVPITVLRRAPDTCDIQVIYRQRIITKSANPLSTSGTSHRPPVFAATGRKESSSGISKHISGPANASAESKVQNSFGIASLSELNYPYSYAFSSVGSSTNGSTIRQSNSMVSAKTEQAEVEHLRLELQNTVAMYKQACEELVHTQSKVQVLSSECLEEARRVNAALEREETFRKIAAEEKAKHMQAMKEVDEAKNLLSKEAYERQVAEFNALKKSLEKQKIVDALFCGDKRYRKYTSDEIEVATDFFSESNVIGQGGYGKVYKCSLYHTLVAVKVLRPDAIEWKEEFLKEVEVLSQLRHPHIVLLLGACPENGCLVYEYLENGSLDEYIFHRNGKPPLPWFIRFRIVFEVASGLAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDVVPDNITEYRDSIIAGTLYYMDPEYQRTGTIRPKSDLYALGVTTLQLLTARHPNGLLLAVENAITKSSLADILDKSVTDWPLAETEELARIALKCSKLRCRDRPDLDTEILPILKRLVDVADASLKLEKNNAYAPSHYFCPILQEVMDDPHIAADGFTYEHRAIKAWLQKHNVSPVTKCRLQHSVLTPNQTLRSAIQEWKSRVTLSGT
Length752
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy-0.249
Instability index39.97
Isoelectric point8.38
Molecular weight83644.79
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00578
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.60|      32|      34|     479|     511|       1
---------------------------------------------------------------------------
  479-  511 (55.93/40.57)	HRNGKPPLPWFIRfRIVFEVAS.GLA.FLHNSKPD
  515-  548 (45.67/27.70)	HRDLKPGNILLDR.NYVSKIGDvGLAkLISDVVPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.21|      26|      29|     311|     339|       2
---------------------------------------------------------------------------
  314-  339 (42.85/32.67)	LEREETFRKIAAEEKA..KHMQAMKEVD
  344-  371 (36.37/18.96)	LLSKEAYERQVAEFNAlkKSLEKQKIVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.11|      27|     146|     425|     453|       3
---------------------------------------------------------------------------
  386-  422 (36.87/25.22)	DEIEVATDFFSESNVIGQggygkvykcsLYHTLVAVK
  427-  453 (46.25/29.55)	DAIEWKEEFLKEVEVLSQ..........LRHPHIVLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.16|      13|      16|     276|     288|       5
---------------------------------------------------------------------------
  276-  288 (23.07/20.28)	QNTVAMYKQACEE
  293-  305 (21.09/17.79)	QSKVQVLSSECLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.99|      20|      20|     121|     140|       7
---------------------------------------------------------------------------
  121-  140 (33.87/21.95)	RYISEFGINTLVLGSYSSNC
  143-  162 (33.12/21.30)	RKLKGTGVPITVLRRAPDTC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00578 with Med32 domain of Kingdom Viridiplantae
Unable to open file!