<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00572

Description Heat shock protein 70B
SequenceMAAKAQGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMKHWPFKVVAGPGDKPMIVVTYKGEEKQFAAEEISSMVLTKMKEVAEAYLGQTVTNAVTTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRVVNHFVQEFKRKHKKDISSNARALRRLRTACERAKRTLSSTTQTTIEIDSLYAGIDFYSTITRARFEELNMDLFSKCMEPVEKCLRDSRIDKSQVDEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDITPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPAAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAERYKAEDEEVKKKVEAKNSLENYAYNMRNTVKDEKFAGKLDPSDKQKIEKAIDETVEWLDRNQLAEVDEFEDKLKELEGICNPIISKMYQGGGGDVPMGGTEMPSSGYGKAGSGGTGAGPKIEEVD
Length654
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-0.429
Instability index34.50
Isoelectric point5.32
Molecular weight71663.27
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00572
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.59|      51|     189|     170|     230|       4
---------------------------------------------------------------------------
  170-  230 (63.62/68.46)	GLNVLRIINePTaAAIAYGLDKKAS.RSGEKNVLIFDLggGTFDVSLLTIeeGIfevkATAG
  362-  413 (83.97/53.03)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNKKVQDL..LLLDITPLSL..GI....ETAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.85|      18|      21|      38|      55|       5
---------------------------------------------------------------------------
   16-   33 (18.49/ 8.66)	....TTYSCVGVWQNDRveIIA
   38-   55 (32.65/20.42)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.72/13.84)	NQvaMNPQNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.19|      31|      33|     535|     567|       6
---------------------------------------------------------------------------
  535-  567 (43.39/33.04)	DEEVKKKVE..AKNSLENYAYNMRNTVkDEkFAGK
  569-  601 (48.81/28.39)	DPSDKQKIEkaIDETVEWLDRNQLAEV.DE.FEDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00572 with Med37 domain of Kingdom Viridiplantae
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