<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00561

Description Uncharacterized protein
SequenceMDNSNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKITDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKCQNTIPNTGTNSKPPDPGSQAMQNQVHSQGQSIPIPLQSNQSQTRQQLLPQNVPNNMTSAGVQSSAGLQYGMPPVSGLTQNPIPNVVGQNSNMQNMSGTMQNSLGQGMPSNIFANQQRQMQGRQQVHPQQQQQQQQQLYHQQLQHQLMTQQGNLQLSLMQSHMQQQQQQNLLPPTQLQSGMQTSSTMQPSAMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQAASAGIHQQQTPMTQQSMMPQQHQQPPQPQPQQHQQPHVMGQQTNDANIQQTQLIGQQNSIGDMQQQRLLGHPNNLSNLQQQQQQQQLMAQQNNLSNIHQQQLIGTKSGNSSMQTNQQSLHMLSQAKVPLQQTQQSAPSLLPTQGQTSQQPPLQQHRQLMLQMQSQSTQLQQQLGLQQQPNQFQRDMQQRLQASSPLLQSQNLIDQLKQLYQLQRAVPETSSTSLDFTAQTGHANGGDWQEEVYQKIKTMKETYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEQLKLFKTMLERIITFLTVSKANILPTFKDKLTSYEKQIINFINTNRPRKPASTLQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLESINIQGSVPTMQTNNTTSLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVAPGPLQQNPVSTYQQANISSLSSQSGISVLQQNMNPLQSNSSMLQHQHLKQQELQMLQSQQLKQQYQQRQMQQQPYIQKLQLLQQQQAKQQLPTQLQTHQMPQLHQMNDVNDMKMRQGMGFKPGVFQQHLPAGQRQSYTHEQLKQGSQFPFSSPHLLQAASPQMPQHSSPQVDQQSLLTSISKTGTPFQSANSPFVVPSPSTPLAPSPMLGESEKAVPATSSLSNAANVGHQQETGVQPGSQALVLKLKHALTLTFCFTVYFALLYWLLRVLY
Length1032
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.04
Grand average of hydropathy-0.885
Instability index74.10
Isoelectric point9.61
Molecular weight115935.83
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00561
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     912.93|     121|     121|     125|     245|       1
---------------------------------------------------------------------------
  134-  256 (211.67/40.47)	S..QTRQQLLPQNVP.NNMTSAGVQSSAGLQYG.MP......PVS.G.LT..QNPIPNVVGQNSNM.............QNMSGTM.......QNSL..G.QGM..PSNIFAN.QQ.....RQMQGRQ.QV.HPQ.....QQ.....QQ....QQQQLYHQQLQ........H..QLMT.QQGNLQLSLmQSHmQ
  257-  337 (88.24/11.25)	Q..QQQQNLLP...P.TQLQS.GMQTSSTMQ....PsamqstPLP.G.LQ..QN.......QQSSL.............QQSTQSM..........L..Q.Q..........H.QQ.....SVL..RQ.QQ.QPQ.....QAasagiHQ....QQTPM.....................................
  338-  434 (131.61/21.52)	....TQQSMMPQ.........QHQQ..........P......PQP.Q.PQ..QHQQPHVMGQQTND.............ANIQQTQ...ligqQNSI..G.DM.........Q.QQ.....R.LLG......HPNnlsnlQQ.....QQ....QQQQLMAQQNN........L..SNIH.QQQLIGT...KSG.N
  435-  540 (105.69/15.38)	SsmQTNQQSLHMLSQ.AKVPLQQTQQSAP...S.LL......PTQ.G.QTsqQPPLQQHRQLMLQM.............QSQSTQL.......QQQL..GlQQQ..P.NQF....Q.....RDMQQRL.QAsSPL.....LQ.....SQnlidQLKQLY..QLQ........R..A...................
  541-  631 (76.64/ 8.50)	.............VPeTSSTSLDFTAQTGHANG....................GDWQEEVYQ..KI.............KTMKETY.......LPEL..N.E.M..YQKIAAK.LQ.....QHDSLPQ.Q...PK.....SD.....QL....EQLKLFKTMLE........RiiTFLTvSKAN...........
  632-  721 (118.90/18.51)	........ILP.TFK.DKLTSYEKQ..............................IINFINTNRPR.............KPAS.TL.......QQ....G.QLP..PPHMHSM.QQ.....PQPQINQtQS.H........D.....NQ....MNPQLESINIQ........G..SVPT.MQTNNTTSL.QHN.S
  729-  854 (109.58/16.30)	S..TAQQTMLNSLQP.....GSNLDSGQGNALGsMQ......QVApGpLQ..QNPVSTY..QQANIsslssqsgisvlqQNMNPLQ.......SNS.....SML..QHQHLKQ.QE.....LQMLQSQ.QL.KQQ....yQQ.....RQ....MQQQPYIQKLQllqqqqakQ..QLPT.Q..............
  859-  951 (70.60/ 7.07)	....................................................QMPQLHQMNDVNDM.............K.MRQGMgfkpgvfQQHLpaG.QRQsyTHEQLKQgSQfpfssPHLL..Q.AA.SP..............Q....MPQHSSPQVDQ........Q..SLLT.SISKTGTPF.QSA.N
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.17|      10|      19|      57|      70|       5
---------------------------------------------------------------------------
   57-   70 (11.14/25.24)	LRKIAVrfeeKIFT
   79-   88 (17.03/15.32)	LRRISL....KMLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.73|      19|      19|      94|     112|       6
---------------------------------------------------------------------------
   94-  112 (35.03/17.13)	QNTIPNTGTNSKPPDPGSQ
  115-  133 (33.70/16.13)	QNQVHSQGQSIPIPLQSNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00561 with Med15 domain of Kingdom Viridiplantae
Unable to open file!