<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00560

Description Uncharacterized protein
SequenceMDNNNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKIMDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKSQNSIPNTGNNGKPPDPGSQAMQNQVHGQGQSIPIPLQSNQSQARQQLLPQNVPNNMASAGVQSSAGLQSGMPPVSGLTQNPIPNVVGQNSNMQNMSGITQNSLGQGMPSNIFANQQRQMQGRQQVHPQQQQQLYHHQLQHQLMRQKIQPGNLQPSLMQSHMQQQQQQNLLPPTQLQSSQQSGMQTSSVMQPTVMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQPASAGIHQQQTPMTQQSMMPQQHQQPPQPQQQQQPHVMGQQTNAANITQNQLIGQQNGIGDMQQQRLLGQPNNLSNLQQQQQQQQLMAQQTNLSNIHQQQLGPQSNISGLQQQQQQQQLIGTQPGNSSMQTNQQSLHMLSQPKVPLQQTQQSAPSLLPTQGQTSQQPPPQQQQQQLMSQMQSQATQSQQQLSLQQQPNQLPRDMQQRLQASGQASSPLLQSQNHIDQQKQLYQSQRAVPETSSTSLDSTAQTGHANGGDWQEEVYQKIKTMKETYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKLFKTMLERIITFLSVSKANILPTFKDKLTSYEKQIINFINTNRPRKPASTLQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSINIQGSVPTMQTNNMTSLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVAPGPLQQNPVSTSQQANISSLSSQSGISVLQQNMNPLQSNSNMLQHQHLNKPEQQMLQSQQLKQQYQQRQMQQQQYIQKQQLMQQQQQQQQQQQQQLHQQAKQQLPTQLQTHQIPQLHQMNDVNDMKMRQGMGVKPGVFQQHLPAGQRQSYTHQQLKPGSQFPISSPQLLQAASPQMPQHSSPQVDQQSLLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMLGESEKPVPGTSSLSNAANVGHQQGTGVQPGSQSLAIGTPGISASPLLAEFTGADGTHPTALTTVSSRSNITEQPLERLMKAVKSMSPTALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMNGTKRMRRYTSAMPLNVVSSAGSVNDSFKQLTGSETSDLESTATSSVKRPRIEANHALLEEIREINLRLIDTVVDISDEDVDPSAAAATAEGGEGTIVKCSFSAVALSSNLKSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSISLRTLSQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1367
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.03
Grand average of hydropathy-0.810
Instability index72.82
Isoelectric point9.36
Molecular weight150575.81
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00560
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     239.41|      32|      32|     382|     413|       1
---------------------------------------------------------------------------
  335-  356 (43.09/ 7.13)	QQQ..TPMTQQSMM......P..QQHQQP.PQP
  382-  413 (60.23/13.33)	QQNGIGDMQQQRLLGQPNNLSNLQQQQQQ.QQL
  416-  446 (49.69/ 9.52)	QQTNLSNIHQQQ.LGPQSNISGLQQQQQQ.QQL
  491-  520 (44.85/ 7.77)	SQQPPPQQQQQQLMSQMQ..SQATQSQQQ.LSL
  868-  900 (41.55/ 6.58)	QQQQQQQQQQQQLHQQAKQQLPTQLQTHQiPQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.90|      17|      17|     828|     844|       8
---------------------------------------------------------------------------
  828-  844 (28.12/ 6.36)	QHQHLNKPEQQMLQSQQ
  848-  864 (30.78/ 7.87)	QYQQRQMQQQQYIQKQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.95|      17|      17|     589|     605|      10
---------------------------------------------------------------------------
  589-  605 (30.60/21.73)	EEVYQKI..KTMKETYLPE
  607-  625 (25.34/16.55)	NEMYQKIaaKLQQHDSLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.38|      20|      28|    1014|    1035|      11
---------------------------------------------------------------------------
 1028- 1058 (17.55/ 8.57)	QQGTgvQPgsqslaigtPGISASPLLAEFTG
 1059- 1078 (24.83/ 7.81)	ADGT..HP.........TALTTVSSRSNITE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     229.64|      35|     341|     108|     142|      12
---------------------------------------------------------------------------
  108-  142 (63.75/19.45)	DPGSQAMQNQVHGQGQ.SIPIPLQSNQ..................S...QARQQLLP
  186-  220 (43.13/10.02)	QNMSGITQNSL.GQG...MPSNIFANQ..................QrqmQGRQQVHP
  453-  485 (43.39/10.14)	NSSMQTNQQSLHMLSQpKVP..LQQTQ......................QSAPSLLP
  525-  559 (42.88/ 9.91)	NQLPRDMQQRLQASGQaSSP.LLQSQN..................H...IDQQKQLY
  770-  819 (36.50/ 6.99)	DSGQGN...ALGSMQQ.VAPGPLQQNPvstsqqanisslssqsgiS...VLQQNMNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.93|      27|      48|      27|      53|      16
---------------------------------------------------------------------------
   27-   53 (45.80/29.44)	QADSRQRIVNKI..MDTLKRH.LPFSGQEG
   57-   74 (17.09/ 6.18)	........LRKI..AVRFEEK.I.FTAASS
   75-  104 (37.03/22.34)	QSDYLRRISLKMltMETKSQNsIPNTGNNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      15|      16|    1090|    1105|      20
---------------------------------------------------------------------------
 1090- 1105 (21.88/16.21)	SMSPTALGaSVSDIGS
 1108- 1122 (27.48/15.96)	SMTDRIAG.SAPGNGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.49|      15|      18|     715|     731|      23
---------------------------------------------------------------------------
  715-  731 (19.92/17.16)	NQMNPqLQSiNIQGSVP
  736-  750 (27.57/13.46)	NNMTS.LQH.NSLSSLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00560 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINFINTNRPRKPASTLQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSINIQGSVPTMQTNNMTSLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVAPGPLQQNPVSTSQQANISSLSSQSGISVLQQNMNPLQSNSNMLQHQHLNKPEQQMLQSQQLKQQ
2) MDNNNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKIMDTLKRHLPFSGQEGLNEL
3) PLLAEFTGADGTHPTALTTVSSRSNITEQPLERLMKAVKS
4) QQQYIQKQQLMQQQQQQQQQQQQQLHQQAKQQLPTQLQTHQIPQLHQMNDVNDMKMRQGMGVKPGVFQQHLPAGQRQSYTHQQLKPGSQFPISSPQLLQAASPQMPQHSSPQVDQQSLLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMLGESEKPVPGTSSLSNAANVGHQQGTGVQPGSQSLAIGTP
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
671
1
1051
856
80
848
57
1090
1045
591










Molecular Recognition Features






MoRF SequenceStartStop




NANANA