<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00559

Description Mediator subunit 8 isoform 3
SequenceMEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRAISLFKAISRILEDFDAYSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENASILPVMLSSKLLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIGAACESAEKVLADTRKAYCFGSRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGEGLHLPADQRQITPSLPLHLADIMPAADGVHSFSDPSGMYMKNTPLTSSNIGSQGSLVQLHGQMQFSQPLAHQQYQGRQLPPGHVQHGIGQSQLNQGNQLGRHLSQFSSPANSALYNAAQGTPSTQMIPNMSATMPSQSLLPRMQFGLPGGNPQRSHASQILTDQMFNMGSGPGGMMPMQPQQQQQQQQHGSQGAFSNMPTAQNLQSNMVALQNNPQSHPNFAQQRQQGQQ
Length444
PositionHead
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.05
Grand average of hydropathy-0.559
Instability index54.10
Isoelectric point7.85
Molecular weight48764.66
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00559
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     238.54|      40|      40|     319|     358|       1
---------------------------------------------------------------------------
  245-  277 (45.47/18.30)	SFSDP..SGMY..MKNTPLTS..SNIGS....QGSLVQLHGQM.
  278-  309 (46.40/18.82)	QFSQPL......AHQQYQGRQLPPGHVQ....HGIGQSQLNQ..
  319-  357 (64.53/29.15)	QFSSPANSALYNAAQGTPSTQMIPNMSA....TMPSQSLLPRM.
  358-  397 (55.27/23.88)	QFGLPGGNPQRSHASQILTDQMF.NMGSgpggMMPMQ...PQQQ
  402-  426 (26.88/ 7.70)	..........QHGSQGAFS.....NMPT....AQNLQSNMVALQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.76|      54|     114|      16|      76|       2
---------------------------------------------------------------------------
   16-   76 (75.08/59.11)	QKNQVVAGAErlNQAVQQQlnLESLKTRaISLFKA....ISRILEDF.DAY...SRTNttPKWLDIL..GQ
  132-  195 (74.68/39.98)	KREQLLQGMQ..NLPIPSQ..IEKLKTR.IDMIGAacesAEKVLADTrKAYcfgSRQG..PAILPTLdkGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00559 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQMQFSQPLAHQQYQGRQLPPGHVQHGIGQSQLNQGNQLGRHLSQFSSPANSALYNAAQGTPSTQMIPNMSATMPSQSLLPRMQFGLPGGNPQRSHASQILTDQMFNMGSGPGGMMPMQPQQQQQQQQHGSQGAFSNMPTAQNLQSNMVALQNNPQSHPNFAQQRQQGQQ
275
444










Molecular Recognition Features






MoRF SequenceStartStop




NANANA