<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00557

Description "Receptor protein kinase, putative isoform 2"
SequenceMLILDHAGADTVWIEMDSVEKGIVEIIVRHSVRWLVMGAAADKYYSKKLLQPKSKKAIFVCQMAPVSCHIWFACKGYLIFTRIGGKDRSNIEIATLSPPLDSPVRTVQLEFLSSESVHRVRSLDVEEDTDVIKGKLRPVSWCSEHLNLSSSEVVDTYGSIPLQRDEEEEYQGQASNVTDQLLELSIMDDHNLKQNMFAETVKQWKEENDAMEAKCKAKALECLCVKEMSRRKEMEELLEREKQEVQKMKDQHDELMKELQVVKDQTKVLESQIADSQCTVEELDEKFFSAVELLISFKKKRDDMQIEHGNAIRVLKDLRKLVHGENASFPGTQILEFSFMEINNATRNFDPSWKIGEGKYGSVYKGLLRHVHVAIKMLPSYGCQSLLEFENEVEILSRVRHPNLIMIIGTCPESRSLVFEYLRNGSLEDRLACKNNTPPLPWQTRTRIASEICSALIFLHSNKPCIPHGNLKPSKVLLDANFVSKLSDSGIYRLIPQGERTDISASSCTKANPEVASVYMDPEYLENGKVTRESDVYSLGMLLLRLLTGRPALGLLKDVKCAIETENFNMVLDWSAGDWPLAEAQLLAHLALRCCEKLPLNRLDLVSEIWSVLGPMSESCINSASCLGAKERCRIPSHFVCPIFQEVMEDPLIAADGFTYEADAIRGWLESGHDRSPMTNLKLEHCSLVPNYALHQAIQEWQQQW
Length705
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy-0.278
Instability index45.60
Isoelectric point5.49
Molecular weight79994.07
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00557
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.71|      26|      35|     103|     135|       1
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  103-  128 (43.07/40.32)	PVR..TVQLEFLSSESVHRVRSLDVEED
  138-  165 (39.64/20.93)	PVSwcSEHLNLSSSEVVDTYGSIPLQRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     268.92|      84|     337|      10|     100|       2
---------------------------------------------------------------------------
   10-  100 (134.15/111.92)	DTVWI....EMDSVEKGiveiIVRHsVRwlVMGAAADKYYSKKLLQPKSKKAIFVCQMAPVSCHIWFACKG..YLIFTRI.GGKDRSNIEIATLSPPL
  350-  440 (134.77/91.68)	DPSWKigegKYGSVYKG....LLRH.VH..VAIKMLPSYGCQSLLEFENEVEILSRVRHPNLIMIIGTCPEsrSLVFEYLrNGSLEDRLACKNNTPPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.04|      19|     403|     211|     230|       3
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  211-  230 (31.07/22.76)	MEAKCKAKAlECLCVKEMSR
  616-  634 (35.96/21.93)	MSESCINSA.SCLGAKERCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.67|      17|     150|     180|     197|       4
---------------------------------------------------------------------------
  180-  197 (26.47/20.90)	QLLELSIMDDHNLKQNmF
  333-  349 (31.20/19.33)	QILEFSFMEINNATRN.F
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.81|      23|      29|     232|     254|       6
---------------------------------------------------------------------------
  232-  254 (37.47/24.79)	KEMEELLEREKQEVQKMKDQHDE
  263-  285 (36.35/23.84)	KDQTKVLESQIADSQCTVEELDE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00557 with Med32 domain of Kingdom Viridiplantae
Unable to open file!