<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00553

Description ATP-dependent DNA helicase
SequenceMEAEEIAEELQDVEVEIQDVEDQISALLERQEKLYERQSELTALLETCPVAVKHDSARTTVQVEDWSGPFDWDSRADDIRFNVFGISSYRPNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRQGIALVVSPLLSLIQDQVMGLTASGIPAFMLTSTTNKEDEKFIYKALEKGEGDIKLLYVTPEKISKSKRFMSKLEKCYHAARLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATLKVQNDLMEMLRVPKCLKFVSTVNRPNLFYMVREKSSVGKVVIDEITEYIKESYPNNESGIVYCFSRKECEQVASELCERGISAGYYHADMDVNAREKVHMKWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLIFFRPADVPRQSSMVFYEKSGLQNLYDIVRYCQSKRQCHRGAFFQHFAEPLQECNGMCDSCAFSSEVKEVDASCQAKLMISLVHDMQENNQRVTMLQLVDRVKNKQKQLDLKLKREELEQLVVQLILDRVLKEDFQHTAYATNAYITVGTSANQILQGKKIVKMEVAGRSKVMDSYRKSIKHGVTSGLEFKLDELRKELASSHNGEIFPHSVLSGQQISIISTKKPSSTEEACLKVSNSSLVCLAYHMLDNQLLE
Length668
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy-0.283
Instability index42.56
Isoelectric point6.29
Molecular weight75540.92
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00553
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.63|      51|     191|     355|     408|       2
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  355-  408 (77.50/82.90)	HMKWSKNKlQVIVGTVAFGMGINKPDVRFVIhHSLSKSMETyYQESGRAG.RDGL
  550-  601 (82.13/68.66)	HTAYATNA.YITVGTSANQILQGKKIVKMEV.AGRSKVMDS.YRKSIKHGvTSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.34|      42|     152|     268|     349|       3
---------------------------------------------------------------------------
  269-  329 (57.09/105.24)	P.KCLKFVSTVNRPN....LFYmvrEKSSVGKVVidEIteyikesypnnesgIVYCFSRKECEQVA
  409-  455 (71.25/32.78)	PsECLIFFRPADVPRqssmVFY...EKSGLQNLY..DI..............VRYCQSKRQCHRGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00553 with Med34 domain of Kingdom Viridiplantae
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