<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00544

Description "U-box domain-containing protein kinase family protein, putative isoform 1"
SequenceMGSLVEEIEGEREYDVEETIFVAVGKNVEKSKTTLFWAVQNFPGKRICVLHVQRPTHVLALTQGKLARNKLKQHAVEAFQKLERPKMHERLEEYMLILDHAGVQADTVWIEMDSVEKGIVEIIVRHSVRWLVMGAAADKYYSKKLLQPKSKKAIFVCQMAPVSCHIWFACKGYLIFTRIGGKDRSNIEIATLSPPLDSPVRTVQLEFLSSESVHRVRSLDVEEDTDVIKGKLRPVSWCSEHLNLSSSEVVDTYGSIPLQRDEEEEYQGQASNVTDQLLELSIMDDHNLKQNMFAETVKQWKEENDAMEAKCKAKALECLCVKEMSRRKEMEELLEREKQEVQKMKDQHDELMKELQVVKDQTKVLESQIADSQCTVEELDEKFFSAVELLISFKKKRDDMQIEHGNAIRVLKDLRKLVHGENASFPGTQILEFSFMEINNATRNFDPSWKIGEGKYGSVYKGLLRHVHVAIKMLPSYGCQSLLEFENEVEILSRVRHPNLIMIIGTCPESRSLVFEYLRNGSLEDRLACKNNTPPLPWQTRTRIASEICSALIFLHSNKPCIPHGNLKPSKVLLDANFVSKLSDSGIYRLIPQGERTDISASSCTKANPEVASVYMDPEYLENGKVTRESDVYSLGMLLLRLLTGRPALGLLKDVKCAIETENFNMVLDWSAGDWPLAEAQLLAHLALRCCEKLPLNRLDLVSEIWSVLGPMSESCINSASCLGAKERCRIPSHFVCPIFQEVMEDPLIAADGFTYEADAIRGWLESGHDRSPMTNLKLEHCSLVPNYALHQAIQEWQQQW
Length801
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy-0.305
Instability index45.79
Isoelectric point5.70
Molecular weight91135.80
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00544
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.86|      27|     184|     521|     549|       1
---------------------------------------------------------------------------
  521-  549 (46.89/34.63)	GSLEDrlACKNNTPPLPWQTRTRIASE.IC
  710-  737 (47.98/29.26)	GPMSE..SCINSASCLGAKERCRIPSHfVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.82|      41|     184|      62|     116|       2
---------------------------------------------------------------------------
   62-  104 (64.19/30.55)	TQGKLArnKLKQHAVEAF..QKLERPK.MHERLEEYMLILDHAGVQ
  252-  290 (61.58/24.19)	TYGSIP...LQRDEEEEY..QG.QASN.VTDQLLELSIMDDHNLKQ
  310-  335 (12.05/10.22)	........KCKAKALECLcvKEMSRRKeMEELLE............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.90|      11|     186|     462|     472|       3
---------------------------------------------------------------------------
  462-  472 (19.98/12.50)	GLLRHVHVAIK
  650-  660 (19.92/12.44)	GLLKDVKCAIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.99|      15|      34|     199|     213|       7
---------------------------------------------------------------------------
  199-  213 (25.41/17.46)	PVR..TVQLEFLSSESV
  234-  250 (20.59/12.68)	PVSwcSEHLNLSSSEVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00544 with Med32 domain of Kingdom Viridiplantae
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