<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00537

Description "Transcription elongation factor (TFIIS) family protein, putative isoform 1"
SequenceMDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLYATSMVTRCKSCDFGERSNGYQVNKEGSPNEGKGGEGGRESPFTPQSDNEDGDLDPYGGLFDDEQKRVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQPGELESAALMDGDSPQQKLPQNGRQQVPDFAYSPNPHNGSFGLEKNNSEPERKPKPIPPPRKDPPPRPTHSTPPQNVQRQREQKESNFDSERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNKGGGSQGRHW
Length337
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-1.105
Instability index54.30
Isoelectric point5.71
Molecular weight38202.91
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00537
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.07|      27|      89|     218|     244|       1
---------------------------------------------------------------------------
  218-  244 (51.53/27.38)	QVPDFAYSPNPHNGSFGLEKNNSEPER
  309-  335 (50.54/26.74)	QVMDIHELPKPKNAFFGKNKGGGSQGR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00537 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NQPGELESAALMDGDSPQQKLPQNGRQQVPDFAYSPNPHNGSFGLEKNNSEPERKPKPIPPPRKDPPPRPTHSTPPQNVQRQREQKESNFDSERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNKGGGSQGRHW
2) SNGYQVNKEGSPNEGKGGEGGRESPFTPQSDNEDGDLDPYGG
191
65
337
106










Molecular Recognition Features






MoRF SequenceStartStop




1) KNAFFGKNK
2) KRVLEIK
320
113
328
119