<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00527

Description Pre-mRNA-processing protein 40A isoform 7
SequenceMANNSQPSSAQPHWPPAVGSLGPQSYGSPLSSQFRPVVPMQQGQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPMQQFPPRPNQPGLSAPSAQPMHVPFGQTNRPLTSGSPQSHQTAPPLNSHMPGLGAPGMPPSSSYSYVPSSFGQPQNNVSASSQFQPTSQVHASVAPVAGQPWLSSGNQSVSLAIPIQQTGQQPPLISSADTAANAPIHTPPSASDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATAGKVNVTPVEEKVPDDEPLVYANKQEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVELERKERENAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLVMFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMDEHVVDGTLTAKTYWRDYCLKVKDLPPYLAVASNTSGSTPKDLFEDVVEELEKQVCASNLFSARFDVYFFLLHYSSLQQRTNDFHTFFMVSFLHE
Length787
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.08
Grand average of hydropathy-0.703
Instability index58.21
Isoelectric point6.59
Molecular weight87431.58
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00527
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     223.02|      38|      38|     216|     253|       1
---------------------------------------------------------------------------
    5-   44 (39.72/15.63)	SQPSS..........aqP.HW...PPAVGSL...gpQSygsPLSSQFRPVV...PMQQGQ.
   45-   77 (30.57/10.40)	...................HF...VPAASQQfrpvgQV...PSSNVGMPAVQNQ...QMQF
  152-  201 (36.70/13.90)	GQPQNnvsassqfqptsQVHAsvaPVAGQPW...........LSSGNQSVSLAIPIQQTGQ
  202-  248 (62.03/28.38)	QPPL...issadtaanaPIHT...PPSASDW.....QE...HTSADGRRYYYNKKTRQSSW
  249-  289 (54.00/23.79)	EKPLE.........lmtPIER...ADASTVW.....KE...FTTPEGRKYYYNKVTKQSKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     349.71|      65|      65|     545|     609|       2
---------------------------------------------------------------------------
  479-  541 (89.55/57.96)	.FKSLL.E...SANVQSDWTWEQTMREIINDKRYGAL...KTLGERKQAFNEYLGQRKKLEAEERRMRQKK
  545-  609 (102.36/67.30)	EFTKMLEE...SKELTSSMRWSKAQSLFENDERFKAV...ERARDREDLFENYIVELERKERENAAEEKRR
  613-  671 (94.75/61.75)	EYRKFLES...CDFIKANSQWRKVQDRLEDDERCSRL...EKI.DRLVMFQDYIHDLEKEE.....EEKKK
  687-  746 (63.05/38.65)	AFRKLMDEhvvDGTLTAKTYWRDYCLKVKDLPPYLAVasnTSGSTPKDLFEDVVEELEKQ...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.99|      48|      49|     346|     394|       3
---------------------------------------------------------------------------
  305-  338 (35.65/13.70)	........VASQGAPSDTGVA.........SQA..PVAGAVSSaemPAAAI.PV
  346-  394 (75.33/40.17)	SSPVSVTPVAAVANPSPTLVSgSTVVPVSQSAA..TNASEVQS...PAVAVTPL
  398-  446 (66.02/31.07)	SSGGSTTPVTSV.NANTTMIR.SLESTASQDSVhfTNGASAQD...IEEAKKGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.97|      13|      43|      91|     104|       4
---------------------------------------------------------------------------
   79-   98 (14.55/ 8.02)	QPMQQFpprpnqPgLSAPSA
   99-  117 (20.42/ 7.46)	QPMHVPfgqtnrP.LTSGSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.29|      10|      15|     141|     150|       6
---------------------------------------------------------------------------
  141-  150 (18.26/ 7.03)	SSSYSYVPSS
  159-  168 (18.03/ 6.86)	SASSQFQPTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00527 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GNQSVSLAIPIQQTGQQPPLISSADTAANAPIHTPPSASDWQEHTSADGRRYYYNKK
2) MANNSQPSSAQPHWPPAVGSLGPQSYGSPLSSQFRPVVPMQQGQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPMQQFPPRPNQPGLSAPSAQPMHVPFGQTNRPLTSGSPQSHQTAPPLNSHMPGLGAPGMPPSSSYSYVPSSFGQPQNNVSASSQFQPTSQVHASVAPVAGQPW
3) SAEMPAAAIPVSSNTSQASSPVSVTPVAAVA
4) SPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATAGKVNVTPVEEKVPDDEPLVYAN
186
1
328
361
242
182
358
471










Molecular Recognition Features






MoRF SequenceStartStop




NANANA