<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00521

Description "Reduced epidermal fluorescence 4, putative isoform 1"
SequenceMEIEKEIEQRIARWKEQEDTTPLVWVAEMAKCIVSHGLGLPSVELGQVLVSHLCFRTNQPSLWKFLQHAFSSRLLSPLHVLSLLTCRVIPFRHSQPEAYRLYVELLRQYALSFDPSVPDTCKQQIVDSVDVTLQLSQNYGVHVVELGHAFVFFFSTIVTALIDCILDDWGLRMTSLDAQNGAVGTGSMDHHPIDTDTGGVYHIERDKQLEQMRWKNSFLAIEVLGQLTESLRAMVLLRLVYLNMPEKFNDLLQRLHFLEANKSACPSLTSANQILARLLANVKRIPSFEYQLKKHRLIGMLVGKGSCKPVSCCNFGSGQSACWVPFDIYMENAMDGKQLSVKSAIVILRETIYTLRVFNRASWKETFLALWLSALRLVQRERDPLEGPIPHLEARLCILLSIVPLAIANVFEDEAKLQSSSSQESRYEDGMGEKGCDATKSGLISALQLLGNFSGLLSPPASITAAANAAAAKVSSFILKNRRDGRTSGSPIETCLNAGGNMRHLIVEACIARNLIDSSAYFWLGYVSSSMVSSELSPIKKSPWTTFMEGAPLSGHLVNSLLTTPASSLAEIEKLYHIALHGSVEEKSAAAKILCGASLSQGWNVQEHVVHFVVKLLSPPVPPGYVGPRNHLIDHMPMLCAVLFGASSIDTVHILSLHGVIPEVAASLMPLCETFGSLVPTPCSKSSTGDEPSIYMVFSAAFLFLLRLWKFYKPPLELCTTGGVMGGELTLEYLLLLRNSRIASQNFATHDEMDSNSEQLEFASNKPIYIDYFPKLRAWYCQNRSCIASTLSGLCSGNPVHEVANKILSMIYRKMAESGASQGDSATPSSSSICGSLASSREDVYQIPMLSAWDVLEATPFVLEAILTACAYERLSSRDVTTGLRDLVDFLPASVAVIISYFCAEVTRGIWKPVPMNGTDWPSPAAYLPLVESQMKEILATAGVHVPSYTLGTSVMLPLPIAALVSLTITFKLNKSLEYIHAVVGPALENCASSCPWPSITIIGSLWAQKIHRWHNFIVVSCSRSIFRQNKEAIEQLLRSCFTSFLGSNNSTLSTNQSGVNGLLGSIIATAGVCPSIAPGFLYLRSCRTIQDVQYVNDVIVKLVAEYARESAARWTCKDTRNLRSSNSSLSFAVDSAREVAMLGASLLCVSGGFQLVQELYQETILTWLLSSRGEKLGNVSSVACIVEGYAMAYLLMMSGSLAWCVGAKAPSWAISKRACVVGVHMDFLARVLEGHILLGCDPATWRAYVSCLVGLIVNCAPAWIQQVKLETLRKLAKGLIGWHEYELALSLLERGGISAIESVAELVNVIY
Length1312
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.08
Grand average of hydropathy0.198
Instability index48.82
Isoelectric point6.55
Molecular weight143944.10
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00521
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.36|      33|      35|    1166|    1200|       2
---------------------------------------------------------------------------
 1148- 1195 (41.65/28.40)	LCVSGgfqlvqelyqetiLTWLLSSRGEKLGnVSSVACIVeGYAMAYL
 1196- 1229 (58.71/31.49)	LMMSG............sLAWCVGAKAPSWA.ISKRACVV.GVHMDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.72|      29|      35|     891|     925|       3
---------------------------------------------------------------------------
  891-  924 (52.69/40.79)	LPasvavIISYFCAEV..TRGIWKPVPMNGTD..WPSP
  928-  960 (42.03/19.39)	LP.....LVESQMKEIlaTAGVHVPSYTLGTSvmLPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.59|      29|      35|     451|     481|       4
---------------------------------------------------------------------------
  451-  481 (43.66/26.63)	GNFSGllSP.PASITAAANAAAAKVSSFILKN
  485-  514 (48.93/24.98)	GRTSG..SPiETCLNAGGNMRHLIVEACIARN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.20|      33|      36|      25|      60|       5
---------------------------------------------------------------------------
   25-   60 (51.17/36.03)	WvaEMAKCIVSHGLgLPSVELGQVLVSH.LCFRTNQP
   63-   96 (56.03/29.76)	W..KFLQHAFSSRL.LSPLHVLSLLTCRvIPFRHSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.94|      13|      30|     636|     651|       7
---------------------------------------------------------------------------
  636-  651 (13.50/18.12)	MPmLCAVlFGaSSIDT
  669-  681 (27.44/14.50)	MP.LCET.FG.SLVPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.70|      17|      35|     826|     844|       8
---------------------------------------------------------------------------
  826-  844 (22.98/20.00)	ATP....SSSSICG..SLaSSReDV
  858-  880 (20.72/ 8.86)	ATPfvleAILTACAyeRL.SSR.DV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.07|      28|      38|     103|     135|       9
---------------------------------------------------------------------------
  103-  135 (40.39/41.34)	VELLRQYALSFDPSVPdtckqQIVDSV..DVTLQL
  144-  173 (45.68/31.73)	VELGHAFVFFFSTIVT.....ALIDCIldDWGLRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.11|      14|     194|       1|      16|      13
---------------------------------------------------------------------------
    1-   16 (21.14/24.23)	MEIEKEIEQriARWKE
  203-  216 (26.97/21.49)	IERDKQLEQ..MRWKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00521 with Med33 domain of Kingdom Viridiplantae
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