<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00508

Description "Transcription elongation factor family protein, putative isoform 2"
SequenceMMVGEVYRIKEILHNSQDESDSVLFDSLRRLQLMALTVDILKATGIGKAVNRVRKHSSKQIRHLAQTLIDGWKELVDEWVNAAKAIAEGTPESVNPSVLDNEEEKEEEEEEEEEEGLPSPPLDVGAFFATQPTSMELSQFFDGMDDDGNPRNSGEFIKNLDNRRKPSQENQNVSKRKQQTSSEAVLLTKDDKSRQMKRQEPVDNPNNKPQRKNMGSGRPPKHDMEQKANFESKLLLKSDKMAVPKKPLSSQQDKFKTSDDIAVQRKLEATKRKLQERYQQAENAKRKRTIQVMELHDLPKQGSVPKNAYMKPGNHNRQWVNGRR
Length324
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.04
Grand average of hydropathy-1.121
Instability index58.40
Isoelectric point8.76
Molecular weight37110.32
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00508
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.84|      20|      52|     149|     169|       1
---------------------------------------------------------------------------
  149-  169 (32.21/20.12)	NPRNSGEFiKNLDNRRKPSQE
  204-  223 (39.62/21.06)	NPNNKPQR.KNMGSGRPPKHD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00508 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIAEGTPESVNPSVLDNEEEKEEEEEEEEEEGLPSPPLDVGAFFATQ
2) TSMELSQFFDGMDDDGNPRNSGEFIKNLDNRRKPSQENQNVSKRKQQTSSEAVLLTKDDKSRQMKRQEPVDNPNNKPQRKNMGSGRPPKHDMEQKANFESKLLLKSDKMAVPKKPLSSQQDKFKTSDDIAVQRKLEATKRKLQERYQQAENAKRKRTIQVMELHDLPKQGSVPKNAYMKPGNHNRQWVNGRR
85
133
131
324










Molecular Recognition Features






MoRF SequenceStartStop




1) EQKANFESKLLLKS
2) KNAYMKPGNHNRQWVNG
225
306
238
322