<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00506

Description Serine/threonine-protein kinase irlC isoform 1
SequenceMLQQHQHYLQSAATAAPPLPPPATSTPPSSTAGEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALFVAAQPHQSSKPLHLFRQEDDSMRQHLQDLRTIGRQLEESGVLNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDEQNGQGTDSVSKKHRSSQALLEDNQDNLSDCKTLSDVLTSLEKDMPNLKVLTYERLDWLKRASSLPASANDNTMEVPKHNFHSSSILRPGPQTVVSMDKVAVIELLFPSVFRAVVSLHPAGSTDPDSVAFFSPDEGGSYIHARGSSVYHVYRHITEHAAVALQYFLGIRSETALHSLLHWICSYRSLFTDICSKCGRLLAMEKQSALLLPPVHRPYRTFSPSKVSSTQAIASTGDQSCSAPGAYHIGCFSDEA
Length429
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy-0.325
Instability index57.27
Isoelectric point7.33
Molecular weight47084.68
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
kinase activity	GO:0016301	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00506
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     248.75|      82|     114|      32|     122|       1
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   32-  122 (127.06/110.67)	AGEAPpkqvALAMDRLGHAARLIADIR......LGADRLLEALFVAAQPHQSSKPLHLFRQEDDSMRQHLQD.LRTIGRQLEESGVLN.ESLrsrsnSW
  145-  234 (121.69/85.12)	AGQAG....ASAVDRTRLALKAFTDQKrrffphLDDEQNGQGTDSVSKKHRSSQALLEDNQDNLSDCKTLSDvLTSLEKDMPNLKVLTyERL.....DW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.16|      31|     101|     273|     305|       2
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  273-  305 (47.48/33.54)	MDKVAVieLLFPSVFRAVVSLHPAGSTDPDSVA
  377-  407 (53.68/32.19)	MEKQSA..LLLPPVHRPYRTFSPSKVSSTQAIA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00506 with Med27 domain of Kingdom Viridiplantae
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