<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00505

Description REF4-related 1
SequenceMEVSWQSSTLWDDVVEQTKVATEKGIDPLPWALQVSSSLSSSGIALPSTELAHVLVNYICWDNNIPTLWKFLDKALMMKIVPPLLVLALLSQRVMPCRRSHPAAYRLYLELLKRHAFTLKCQINGPDYQKVMKSIDATLHLSEIFGLQAMEPGILVVEFIFSIVWQLLDASLDDEGLLELTAERMSRWAIISQEMEIDGHDIYDEKKIEYHERLRNFNTTMAIEIIGRFLQNKITSRILYLARRNMPAHWVGFIQSLRLLGANSAALKNSKALTFEALLELTSDSRVVLSRECKTSSLQKFHAVMAFGSLSSAAGLCHGASRSDLWLPLDLVLEDAMDGYLVNTTSAIEIITGLIKTLQAINGTSWHDTFLGLWIASLRLVQRERDPIEGPVPRLDTRLCMLLSIITLVVAELIEEEEGAPTDEMECGSTNHWKEKKCRRKCRDDLVSSLQVLGDYQGLLAPPQSVVSAANQAAARAMLFVSGINVGSAYFECINMKDMPINCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGRINQLPYSVPAQSPGWSSFMKGAPLTSVMINALVSSPASSLAELEKIFDIAVNGSDDEKISAATILCGASLIRGWNIQEYTVQFITRLMSPPVPSDYAGSDSHLIDYAAMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVSWTLPTGKISPHAVFSNAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLLVRNSHLLSSENIHKDRNKRRLSEVASSSSPQPVFLDSFPKLKVWYRQHQRCIAATLSGLVHGTTVHQTVDGLLNMMFRKINRGSQSVTSVTSGSSTSSGPGNEDNSLKPRLPAWDILESVPYVVDAALAACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRVVWKPVVMNGMDWPSPAANLSNVEEHIKKILAATGVDVPRLATGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALESLAADCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNRDAVVQLLKSCFTATLGLNVAPISSNGGVGALLGHGFGSHFCGGLSPVAPGILYLRVYRSMRDIVFITEEVVSLLMDSVREIAYSGLLREKLEKLKTSKNGTKYGQVSLAAGMTRVKLAASLAASLVWLSGGLGLVQSLIKETLPSWFISVHRSQREEGSGLVAMLGGYALAYFTVLCGAFAWGVDSSSSASKRRPKILGTHMEFLASALDGKISLGCDGATWRAYVSGFVSLMVGCTPNWVLEVDVDVLRRLSKGLRQWNEEELALALLGIGGVGTMGAAAELIIEKDF
Length1325
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.08
Grand average of hydropathy0.176
Instability index45.97
Isoelectric point6.59
Molecular weight144782.99
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00505
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.33|      57|      57|    1199|    1255|       1
---------------------------------------------------------------------------
 1199- 1255 (99.38/74.15)	AMLGGYALAYFTVLCG.AFAWGVDSSSSASKRRPKILGT.HMEFLASALDGKISLGCDG
 1256- 1314 (87.94/64.57)	ATWRAYVSGFVSLMVGcTPNWVLEVDVDVLRRLSKGLRQwNEEELALALLGIGGVGTMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     472.14|     119|     224|     623|     742|       5
---------------------------------------------------------------------------
  623-  722 (157.99/92.88)	..............................................MSPPVPS.DYAGSDSHLID.yAAMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVS..W..TLPTGK..I............................SPHAVFSNAFALLLKLWRFNHPP.IE
  723-  795 (57.64/27.61)	HGVGDVPTVGSQLTPEYLLL.............................................................................................................vrnshllssenihkdrnkrrlsevasssSPQPVFLDSFP.KLKVWYRQHQRcIA
  803-  948 (149.02/83.18)	HGTTVHQTVDGLLNMMFRKInrgsqsvtsvtsgsstssgpgnednsLKPRLPAwDILESVPYVVD...AALAACAHGRLSPRELAT.GLKDLADFLPASLATIVSYFSAEVSRVV..WkpVVMNGMdwP............................SPAANLSNVEEHIKKI..LAATG.VD
  949- 1033 (107.49/57.92)	..VPRLATGGS..SPATLPL.............................................plAAFVSLTITYKIDKASERFLNLAG..PALE.SLAADCPW..PCMPIVAslW..TQKAKR..W............................FDFLVFSASRTVFL............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.79|      68|     169|      87|     174|       8
---------------------------------------------------------------------------
   98-  145 (70.71/52.03)	....................................................................................................RRSHPAAYRL.................Y...LELLKRHAFTLKCQINGPDYQKVMK.SIDATLHLSE..............IF
  146-  165 (12.32/ 7.81)	GLQAMEPGIL...VVEFIFSIVW................................................................................................................................................................
  243-  307 (44.60/17.12)	.......................qlldaslddeglleltaermsrwaiisqemeidghdiydekkieyherlrnfnttmaieiigrflqnkitsrilylaRRNMPAHWVG.................FiqsLRLLGANSAALKNSKALT.FEALLElTSDSRVVLSRecktsslqkfhavmAF
 1079- 1142 (48.16/24.96)	GLSPVAPGILylrVYRSMRDIVF.......................................................................................iteevvsllmdsvreiaY...SGLLREKLEKLKTSKNGTKYGQV.............................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00505 with Med33 domain of Kingdom Viridiplantae
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