<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00504

Description Phytochrome and flowering time regulatory protein isoform 2
SequenceMAERQLIVAVEGTAAMGPYWQTVVSDYLDKIIRCFSSSELTGQKTSTSNVELALVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAPNGNQTQQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQTENIEAQTESRLSDAETVAKSFAQCSVSLSVICPKQLSKLKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVPSLASNQSPVKMDMASVTSVNGSMMSRQPVSVGNVPTATIKVEPTTITSMGTGPAFPHIPAVPRAPSPAIPTMQTSSPSTTSQEVMNSGDNVQELKPSVSGMTQPLRPVPPAANVNILNNLSQARVMNSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQSCMTSLTGSGALTGTVQVPPNSGLSSFASATSNVTANSNIGMSQPMGNVQSGVSMGQSVPGMSQGNHSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMFPIPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQHQQQQQLQQQQHQQMQPQLQQQQLPQLQQQQQQLPQLQQQQQPLPQLQQQQQQQQLPQLQQQQLPHLQQQQLPQLQQQQQHPQIQQQQQLPQIQQQQLSQLQQQQQLPQMQQQQQLPQMQQQPQLPQLQQQQLPQQQQMVGSGMGPAYVQGPGRSQLVSQGQVSSQAPPNMPGGGFMG
Length860
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.04
Grand average of hydropathy-0.399
Instability index70.28
Isoelectric point8.78
Molecular weight92629.93
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00504
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.92|      15|      15|     765|     779|       1
---------------------------------------------------------------------------
  757-  774 (31.33/ 6.74)	LQQQQqhpQIQQQQQLPQ
  775-  791 (30.58/ 6.41)	IQQQQ.lsQLQQQQQLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     149.73|      19|      19|     699|     717|       2
---------------------------------------------------------------------------
  677-  697 (30.23/ 6.13)	PQIssqhQQQQ..QL..QQQQHQQM
  699-  717 (45.19/12.65)	PQL....QQQQLPQL..QQQQQQLP
  719-  739 (37.25/ 9.19)	LQQ....QQQPLPQLqqQQQQQQLP
  800-  816 (37.05/ 9.10)	QMQ....QQPQLPQL..QQQQ..LP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.69|      18|      22|     456|     477|       3
---------------------------------------------------------------------------
  456-  477 (29.00/17.03)	GmsqPmGNVQSGVSMGQSVPGM
  502-  519 (28.69/ 7.82)	G...P.STVSSGTGTMFPIPGM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     260.87|      42|      42|     297|     338|       4
---------------------------------------------------------------------------
  205-  234 (38.76/14.70)	......PRAP.....DP..PV.DNVRN.PPFL....VLIS.ENFMEGRAA
  235-  270 (38.05/14.29)	LSRPGVPSLA.....SNQSP..VKMDM.ASVTSvNGSMMSRQPV......
  297-  338 (74.16/34.99)	PHIPAVPRAP.....SPAIPT.MQTSS.PSTTS.QEVMNSGDNVQELKPS
  348-  375 (38.32/14.45)	P....VP..P.....AANVNI.LNNLS.QA.....RVMNSA....ALTGG
  378-  420 (44.27/17.86)	IGLPSMGQTPvamhmSNMISSgMASSV.PP..A.QTVFSSG...QSCMTS
  428-  455 (27.30/ 8.13)	TGTVQVP............PN.SGLSSfASATS.NVTANS..NI......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.03|      23|      65|     478|     500|       5
---------------------------------------------------------------------------
  478-  500 (43.91/21.75)	SQGNHSGAQMVQSG...VGMSQ.NMSG
  520-  538 (21.30/ 6.48)	SQQ.......VQSGmqtLGVSN.SSAA
  543-  567 (29.83/12.24)	SQQTSSALQSAQSK..yVKVWEgNLSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.75|      26|     761|      68|      94|       8
---------------------------------------------------------------------------
   68-   94 (45.99/27.65)	VQRSGWTKDVDIfLQWLSAIP..FSGGGF
  831-  858 (44.75/22.34)	VQGPGRSQLVSQ.GQVSSQAPpnMPGGGF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00504 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPGVPSLASNQSPVKMDMASVTSVNGSMMSRQPVSVGNVPTATIKVEPTTITSMGTGPAFPHIPAVPRAPSPAIPTMQTSSPSTTSQEVMNSGDNVQELKPSVSGMTQPLRPVPPAANVNILNN
2) NSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQS
3) QQQQLPQMQQQPQLPQLQQQQLPQQQQMVGSGMGPAYVQGPGRSQLVSQGQVSSQAPPNMPGGGFMG
4) VTANSNIGMSQPMGNVQSGVSMGQSVPGMSQGNHSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMFPIPGMSQ
234
368
794
449
360
416
860
521










Molecular Recognition Features






MoRF SequenceStartStop




NANANA