<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00502

Description Phytochrome and flowering time regulatory protein isoform 1
SequenceMAERQLIVAVEGTAAMGPYWQTVVSDYLDKIIRCFSSSELTGQKTSTSNVELALVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAPNGNQTQQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQTENIEAQTESRLSDAETVAKSFAQCSVSLSVICPKQLSKLKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVPSLASNQSPVKMDMASVTSGTGPPPTSVPSVNGSMMSRQPVSVGNVPTATIKVEPTTITSMGTGPAFPHIPAVPRAPSPAIPTMQTSSPSTTSQEVMNSGDNVQELKPSVSGMTQPLRPVPPAANVNILNNLSQARVMNSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQSCMTSLTGSGALTGTVQVPPNSGLSSFASATSNVTANSNIGMSQPMGNVQSGVSMGQSVPGMSQGNHSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMFPIPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQHQQQQQLQQQQHQQMQPQLQQQQLPQLQQQQQQLPQLQQQQQPLPQLQQQQQQQQLPQLQQQQLPHLQQQQLPQLQQQQQHPQIQQQQQLPQIQQQQLSQLQQQQQLPQMQQQQQLPQMQQQPQLPQLQQQQLPQQQQMVGSGMGPAYVQGPGRSQLVSQGQVSSQAPPNMPGGGFMG
Length871
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.04
Grand average of hydropathy-0.400
Instability index70.20
Isoelectric point8.78
Molecular weight93607.99
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00502
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.92|      15|      15|     776|     790|       1
---------------------------------------------------------------------------
  768-  785 (31.33/ 6.32)	LQQQQqhpQIQQQQQLPQ
  786-  802 (30.58/ 6.01)	IQQQQ.lsQLQQQQQLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.79|      19|      19|     710|     728|       2
---------------------------------------------------------------------------
  700-  719 (38.21/10.35)	LQQQQHQQMqPQLQQQQLPQ
  720-  739 (38.95/10.70)	LQQQQQQLPqLQQQQQPLPQ
  752-  767 (30.77/ 6.82)	LQQQQ....lPHLQQQQLPQ
  803-  820 (40.86/11.61)	MQQQQQ.LP.QMQQQPQLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     249.67|      40|      40|     467|     506|       3
---------------------------------------------------------------------------
  385-  409 (35.36/10.04)	G.GTS..............iGL....P...........S...............MGQ..TPVAMHMSN.....MISS
  410-  446 (42.63/13.72)	..GMA...............SS..VPPA......QTVfSS.GQS..........CMT..SLTG..SGALTGTVQVPP
  447-  501 (66.14/25.63)	NSGLSsfasatsnvtansniGM..SQPM......GNV.QS.GVS..........MGQ..SVPGMSQGNHSGAQMVQS
  502-  536 (47.41/16.15)	GVGMS.........qnmsglG.....P.......STV.SS.GTG..........TMF..PIPGMSQQ.......VQS
  537-  566 (29.21/ 6.92)	G...................................M.QTlGVS..........NSSaaSMP.LSQQTSSALQSAQS
  574-  627 (28.92/ 6.78)	G.NLS...............GQrqGQPVfitrleGYR.SA.SASetlaahwpqtM.Q..IVRLISQDHMNNKQYV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     220.07|      39|      39|     301|     339|       4
---------------------------------------------------------------------------
  205-  225 (27.65/ 9.37)	..................PRAPDP....PVDNVR.NPPFL....VLIS
  228-  259 (41.12/17.75)	FMEGRA.....AL.....SR...PG..VPSLASNqSPVKMDM.ASVTS
  260-  299 (32.27/12.25)	.GTGPPPTSVPSVngsmmSRQPVSVgnVPTATIKvEPTTI.......T
  301-  339 (70.58/36.07)	MGTGPAFPHIPAV.....PRAPSPA..IPTMQTS.SPSTTSQ.EVMNS
  341-  380 (48.46/22.31)	DNVQELKPSVSGM...tqPLRPVP....PAANVN.ILNNLSQaRVMNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.75|      26|     772|      68|      94|       7
---------------------------------------------------------------------------
   68-   94 (45.99/27.50)	VQRSGWTKDVDIfLQWLSAIP..FSGGGF
  842-  869 (44.75/22.16)	VQGPGRSQLVSQ.GQVSSQAPpnMPGGGF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00502 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPGVPSLASNQSPVKMDMASVTSGTGPPPTSVPSVNGSMMSRQPVSVGNVPTATIKVEPTTITSMGTGPAFPHIPAVPRAPSPAIPTMQTSSPSTTSQEVMNSGDNVQELKPSVSGMTQPLRPVPPAANVNILNN
2) NSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQS
3) QQQQLPQMQQQPQLPQLQQQQLPQQQQMVGSGMGPAYVQGPGRSQLVSQGQVSSQAPPNMPGGGFMG
4) VTANSNIGMSQPMGNVQSGVSMGQSVPGMSQGNHSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMFPIPGMSQ
234
379
805
460
371
427
871
532










Molecular Recognition Features






MoRF SequenceStartStop




NANANA