<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00500

Description WD repeat-containing protein 42A isoform 2
SequenceMMPSTSVITNTSNFQSSNPVSTLTSVHGIGSPAQSTIEPLPGATLSPVKSSDISSNGQPSTTRMNSSIRDNAISSLRQLCCKIILTGLECSLKPVTQAEIFCHMLNWLVNWDQRQQGSEECDGKTWRPDKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAVHMQMLDQHLHCPTFGTHRILSQTTPNVSVEAVANLRYSPITYPSVLGEPLHGEDLAASIQRGSLDWERALRCIRHAIRSTPSPDWWKRVLVVAPCYRGSAQVPTPGAVFTSDMICEATIDRIIELLKLTNSEINCWQEWLVFSDIFFFLMKSGCIDFVDFVDKLGSRLTESDHHILRTNHVTWLLAQIIRVEHVMAALNNDTRKVETTRKILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTTREYLNNEQLQKGKQIDEWWRQVSKGERMMDYMNMDDRSIGMFWVVSYTMAQPAGETVMNWLSSGGATELLSGATVQPNERLMVMQEVSPLPISLLSGFSMNLCLKLVLQLEESLFIGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNASLLSKPGVTLLVLEIVNYRLLPLYRYQGKCKTLMYDVTKIISALKGKRGDHRVFRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITIITLAITIKTRGIADADHLLYLQTMLEQILATSQHTWSKKTLRHFPPLLRDVLMTRIDKRGLAIQAWQQSETTVINQCTQLLSSSADPNYVMTYIRTSFPQHRQYLCAGAWILMQGHPENINSGNLARVLREFSPEEVTANIYTMVDVLLHHIHMELQHGHSLQDLLLKTCANLAFFVWTHDLIPLDILLLALIDRDDDPHALRIVISLLDRQEFQQRMNLYCLNRNSPEHWLHTAIFKRTDLQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDATESADRILAMYSPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLRKIPFSESFPQHISSSNPAMCPPLEYFATLLLALVNNVIPPLNSNSRSGSMGDASNNAMRGPHNRTPPTPHSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVSSLVQIVVNIQPTLIQSSNGLHGPSSGLGQGSVLPTSPSGGSTDSLSAGRSTPSVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPREFHLQLYMEASRIIKESWWLTDGQRSPGELDSAVSYALLDPTWASQDNTSTAIGNIVALLHAFFSNLPQEWLEGTHDIIKHLRPVTSVAMLRIAFRIMGPLLPRLANAHNLFNKILSLLLNILVDVFGKNCQPPVPVDASEIMDLIDYLHHVIHYEGQGGPVQASSKPRPEVLALCGRAAESLRPDVQHLLSHLKTDINSSIYAATHPKLVQNPS
Length1441
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy-0.059
Instability index46.58
Isoelectric point6.60
Molecular weight162078.77
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00500
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     507.46|     157|     182|     100|     281|       1
---------------------------------------------------------------------------
   32-   95 (38.12/10.45)	...............................................................................................................................PAQStIEPLPGATLSPVKSSDISsnGQP.STTRMNSSIR..D.NAISSLRQLCCkiILTGLECSLKP.....V
  100-  281 (247.81/217.28)	IF.CHMLnwlvnwdqrqqgseeCDGKTWRPDKaLIEWLHS...CLDvIWlLVEEDkcrvPFYELLRSG.LQFIENIpddEALFTLILE....IHRRRDMMAVHMQMLD.QHLHCPTFGTHRILSQTTPNVS.VEAVANLRYSPITYPSVL..GEPLHGEDLAASIQ..R.GSLDWERALRC..IRHAIRSTPSPDWWKRV
  300-  462 (221.54/142.09)	VFtSDMI...............CEATIDRIIE.LLKLTNSeinCWQ.EW.LVFSD....IFFFLMKSGcIDFVDFV...DKLGSRLTEsdhhILRTNHVTWLLAQIIRvEHVMAALNNDTRKVETTRKILS.FHR.EDRSSDPNNPQSIL.....L...DFISSCQnlRiWSLNTTREYLN..NEQLQKGKQIDEWWRQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     282.92|      96|     182|     728|     880|       2
---------------------------------------------------------------------------
  728-  854 (141.51/120.36)	RHFPP.LLRDVLMTRID.KRGLAIQ.AWQQSETTVINQ.CTQLLSSSadPNYVMTYIrtsfpqhrqylcagawilmqghpENINSGNLARVLREFSPEEVTANI.YTMV.DVLLHHihmelqHGHSLQDLLLK
  911- 1012 (141.41/95.69)	RNSPEhWLHTAIFKRTDlQKALGNHlSWKDRYPTFFDDiAARLLPVI..PLIVYRLI.......................ENDATESADRILAMYSPFLAYHPLrFTFVrDILAYF......YGHLPGKLIVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.50|      16|     181|     856|     880|       3
---------------------------------------------------------------------------
  856-  880 (21.14/31.92)	CANLAFFvwthdliplDILLLALID
 1040- 1055 (30.36/17.51)	CPPLEYF.........ATLLLALVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00500 with Med23 domain of Kingdom Viridiplantae
Unable to open file!