<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00499

Description "Pre-mRNA-processing protein 40B, putative"
SequenceMANNPQFSGVQPHPPPLVGSMDPPRNFPPPMSAQFRPVVPSQQPQQFVPVAPQLFQPVARGVTVMNSGFSPQTQQPQFPQVMQQLPARPVQPGHIPPAALGISLPTAQPHCHVSPGASLPQPNIQTPNNYVSGGPASHLSSSYPFASSSYGQASVSQNAMAQYQPMPQLQAPSVSVGGHVGIHVSQSSSSVIPVHQIVEQPSVSTATVPAPSIQPKPTEEASTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNWKEFMSPDGRKYYHNKVTNQSTWSIPEELKLAREQVEMASAKGTQSEVSSHIPPPAPPAVKASSGADTPPTIIQGAASSPVPVAPVLATSDVKPVVVSASALPVGASSTVTNVDVVRTAADTITLSAAISESPEASIAVVNAVTAPMNNISKVSSMDMLSTAEGFSAQNADETVKDVVVSEKINNALEEKAIDQDPLTYASKQEAKNAFKVLLECANVGSDWSWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQEAEDRRIKQKKAREEYKTMLEECSELTSSTRWSKAVAMFEDDERYKAVEREKDRKDIFENYIDELRQKERVKAQEQRKRNIVEYRQFLESCDFIKANSQWRKLQDRLETDERCSRLEKIDRLEIFQEYLRDLEKEEEEQRKIQKEELRKAERKNRDEFRKLMEGHVAAGTLTAKTHWRDYCMMVKESPPFMAVASNTSGSTPKDLFEDVAEELQKQYHDDKARVKDAVKLRKISLASTWTLEDLKVAIAEDISSPPISDVNLKLVFEELLQRVREKEEKEAKKRKHLADDFYDLLRSIKEDEKITSSSTWEDCKYHFESSQEFSSIGDEGFCKGIFEEYITELKEEAKEKERRRKEDKAKKEKEREDRERRKAKHGREKERGHEREKEEHLREGPLEGNVDMAEIHDDNENKRSGKDDDKKHWKRHQSSVDNLNESEKERTKNSHRHGSDRKKSKRHASTPESDSENRHKRHKREHRNGSRRNVDHEELEDGEFGERESR
Length1025
PositionUnknown
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-0.954
Instability index59.19
Isoelectric point6.47
Molecular weight116179.41
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00499
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.86|       8|      21|     216|     225|       1
---------------------------------------------------------------------------
  216-  225 (12.59/11.96)	KPTEEAStdW
  240-  247 (15.27/ 6.62)	KKTRQSS..W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     231.45|      38|      38|      84|     121|       2
---------------------------------------------------------------------------
   10-   49 (48.96/26.54)	VQP......H.PPPLVG........SMDP..PRNFPPPM.SAQFR.....pvvpsQQPQQfvP
   50-   89 (39.64/19.96)	VAPQ.....LFQPVARGVtvmnsgfSPQTQQPQ.........FPQ.......vmqQLPAR..P
   90-  130 (66.70/39.04)	VQPG.....HIPPAALGI.......SLPTAQPHCHVSPG.ASLPQ.......pniQTPNN..Y
  131-  173 (38.89/19.43)	VSGG.......PASHLSS.......SYPFASS....SYGqASVSQnamaqyqpmpQLQAP..S
  174-  212 (37.25/18.28)	VSVGghvgiHVSQSSSSV........IPVHQ....IVEQ.PSVST.........aTVPAP..S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.77|      13|      38|     227|     239|       3
---------------------------------------------------------------------------
  227-  239 (27.10/16.57)	EHTSANGRRYYYN
  268-  280 (27.67/17.07)	EFMSPDGRKYYHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     108.58|      23|      23|     967|     989|       4
---------------------------------------------------------------------------
  883-  904 (29.34/13.77)	KAK..KEKE.RED..RE.RRKAK.HGRE......K
  931-  961 (24.17/ 9.99)	HDD..NENK.RSGkdDD.KKHWKRHQSSvdnlneS
  962-  986 (33.92/17.12)	EKErtKNSH.RHG..SD.RKKSKRHAST......P
  987- 1012 (21.15/ 7.78)	ESD.sENRHkRHK..REhRNGSRRNVDH......E
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     518.86|      64|      66|     540|     603|       5
---------------------------------------------------------------------------
  416-  470 (28.00/13.29)	........................SKvsSMDMLSTAEGFSAQNAD...ETVKDVVvsekinnaleEKAID...QDPLTYASKQE...A
  473-  535 (76.10/50.71)	AFKVLL....ECAN...VGSDWSWDQ..AMRVIINDKRYGALRTL...GERKQAF..........NEF...LGQKKKQEAEDRRikqK
  540-  603 (103.51/72.03)	EYKTMLE...ECSE...LTSSTRWSK..AVAMFEDDERYKAVERE...KDRKDIF..........ENYIDELRQKERVKAQEQR...K
  608-  666 (83.94/56.81)	EYRQFLE...SCDF...IKANSQWRK..LQDRLETDERCSRLEK....IDRLEIF..........QEYLRDLEKEE....EEQR...K
  682-  749 (74.10/49.15)	EFRKLMEghvAAGT...LTAKTHWRD..YCMMVKESPPFMAVASNtsgSTPKDLF..........EDVAEEL.QK.QYHDDKAR...V
  750-  810 (68.05/44.44)	KDAVKLR...KISL...ASTWTLEDL..KVAIAEDISSPPI..SD...VNLKLVF..........EELLQRVREKEE.KEAKKR...K
  815-  879 (85.18/57.77)	DFYDLLR...SIKEdekITSSSTWED..CKYHFESSQEFSSIGDE...GFCKGIF..........EEYITEL..KEEAKEKERR...R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.01|      20|      29|     310|     329|       6
---------------------------------------------------------------------------
  310-  329 (36.37/20.42)	QSEVSSHIPPPAPPAVKASS
  339-  353 (19.66/ 7.45)	QGAASS..PVPVAP.VLA..
  355-  373 (22.98/10.03)	.SDVKPVVVSASALPVGASS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00499 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKEKERRRKEDKAKKEKEREDRERRKAKHGREKERGHEREKEEHLREGPLEGNVDMAEIHDDNENKRSGKDDDKKHWKRHQSSVDNLNESEKERTKNSHRHGSDRKKSKRHASTPESDSENRHKRHKREHRNGSRRNVDHEELEDGEFGERESR
2) GVTVMNSGFSPQTQQPQFPQVMQQLPARPVQPGHIPPAALGISLPTA
3) MANNPQFSGVQPHPPPLVGSMDPPRNFPPPMSAQFRPVVPSQQ
4) PHCHVSPGASLPQPNIQTPNNYVSGGPASH
5) PVHQIVEQPSVSTATVPAPSIQPKPTEEASTDWIEHT
6) WSIPEELKLAREQVEMASAKGTQSEVSSHIPPPAPPAVKASSGADTPPTIIQGAASS
871
61
1
109
193
288
1025
107
43
138
229
344










Molecular Recognition Features






MoRF SequenceStartStop




1) ELEDGEF
1013
1019