<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00496

Description "U-box domain-containing protein 33, putative isoform 2"
SequenceMLFHQQQLRGLEEVGNDMMHRIMDDCVLFCREAGVSAEKLFIQRDDVAKGIVELIHRHNIKKLVMGAAAAEHFSERMWLMSEKAQYVNDNAPLSCQIWFICREQLVHKRFETGQSSHALSPSGSGYLTSSSEAAGILDAAVFEEREENECELDRFVLLRSGEDQDSLSMPNEGSGNDQLFDQLEQALQEAETSNRKAYEESNRRVKAEMDAVRAMRQAKAFERLYNERKRETEAALAKQKEELEKMKRQRDEEHLIAIGQKSILDSQVANSDYRIKQLEDQLSSAVEQLQISQKERDELQVELENTRKVTEELLRKQAEETSSTHMQQIYPDQLSASEIHDATLDQLQICQKEKDELQVELENTRKITDEVLRKQAEDTSSTHVQQPYAEFSLSEIQEATEDFDPSFKITEGTRGSVYYRCVLRHTDVAIKVLGQNSLQDPSEFQQEVDELSKSRHPNLVTLIGACPEIWAIIYEYLPNGSLEDRLNCRNDTPPLSSQTRINIATELCSTLMFLHSSKPQSVVHGNLKPGNILLDANFGCKLSDFGARRALSLLEDSSNARPYLDPDFRSTGRLSHSLDLYPFGIILLQLLSGRSTQGIAETAQNALQNLNSFLDSSAGNWPYQVAQLTRLAIRCCDINLSRRPDLASDVLRVLETMRVSSGATLSFLSESDEDNREPPSYFICPILQEVMDDPHVAADGYTYEASALRGWLADHDSSPMTNLRLSHRNLVPNHALRSAIREWQQPH
Length747
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-0.576
Instability index50.56
Isoelectric point5.02
Molecular weight84780.90
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     332.87|      55|      55|     288|     342|       1
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  143-  186 (37.71/17.95)	......EEREEN..ECELD..RFV...LLR..SGED................QDSLSMpnegsgnDQ......LF.DQLEQA.....
  190-  233 (24.68/ 9.31)	...............AETSN.RKAYEESNRRvKAEM................DAVRAM.......RQakaferLYNERKRETE....
  237-  285 (24.40/ 9.13)	.....AKQKEEL.............EKMKRQ.RDEEhliaigqksildsqvaNSDYRI.......KQ......L.EDQLSSA.....
  288-  342 (99.11/58.61)	QLQISQKERDEL..QVELENTRKVTEELLRK.QAEE................TSSTHM.......QQ......IYPDQLSASEIHDA
  346-  399 (91.87/53.82)	QLQICQKEKDEL..QVELENTRKITDEVLRK.QAED................TSSTHV.......QQ......PYAE.FSLSEIQEA
  406-  456 (55.10/29.47)	SFKITEGTRGSVyyRCVLRHT.DVAIKVLGQ.NSLQ................DPSEFQ.......QE......V..DELSKSR.H..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.72|      29|      49|     459|     489|       2
---------------------------------------------------------------------------
  459-  489 (46.25/41.82)	LVTLIGACPEiwAIIYEYLPNGS..LEDRLNCR
  511-  541 (47.48/33.97)	LMFLHSSKPQ..SVVHGNLKPGNilLDANFGCK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00496 with Med32 domain of Kingdom Viridiplantae
Unable to open file!