<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00486

Description "U-box domain-containing protein kinase family protein, putative"
SequenceMAVVSPVPAIAQGVNSMRCRDVIAPGIMSGRREITEEPVARVIEEKIYVAVGKDVERNKSVLFWALQNSGGKRICIIHVHQPAKMIPVTDMGTKFPASKVKEQEVKAYREIGRQEMQKNLDKYLLLCLQSGVQAEKLYIEMDSIEEGILKMISENGIRMLVMGGAADKHYPKYKPHKKAVDLKSKKAISVREHAPASCHTIWFLCKGLLIYTRKISLDVTDTENASSSSSLPARSNLENHFRSLSVIPLQTSHVKPSTCTPDSLRRVRSENFYGRAGSVLGSTFPDGNGGLSTPQRRSDAEGSSDESDGLSRRRHQSSVLSSSSSSGMADAALVPYTGTEVDESGLESIAMSQAKENFNMSSLTGVLNGAIDDTLYNQLQQVMAEAANSRREAFEEAARRAKAEKGALEAMRRVQASEFLYTQELKQRKEIEEAFTKEKEQLDKMKNQRDEVMVELQEALDQKSSLEKQIVESEKVVKELEEKIISAVELLQNYKKEREELQMERDNALKEAEELRKSRAETSGAHMPQFFTEFSFSEIQEATHNFDPSLKIGEGGYGSIYKGLLRHATVAIKRLHSHSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPEAWTLIYEYLPNGSLEDRLSCRDNSPPLSWQTRIRIATELCSVLIFLQSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLNKDTTVCCRTGPKGTFVYMDPEFLATGELTPKADVYSFGVILLRLLTGKQALGITKEVQNALDNGHLKNLLDPLAGDWPFVQAEQLANLALRCCEMNRKSRPDLSTDVWRVLEPMRASCGGSSSFQLGSEEHCLPPSYFICPIFQEVMRDPHVAADGFTYEAEALRGWLDSGHDTSPMTNDKLAHRNLVPNLALRSAIQEWLQQH
Length898
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-0.411
Instability index52.51
Isoelectric point6.27
Molecular weight100177.97
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00486
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.29|      25|      30|     458|     482|       1
---------------------------------------------------------------------------
  458-  482 (37.82/28.99)	EALDQ.KSSLEKQIVESEKVVKELEE
  489-  514 (35.47/26.67)	ELLQNyKKEREELQMERDNALKEAEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     268.98|      82|     279|     516|     602|       2
---------------------------------------------------------------------------
  516-  602 (135.82/95.96)	RKSRAETSG......AHMPQFFTEFSFSEIQEATHNFDPSLKIgeggyGSIYKGLLRHATVAIKRL..HSHSLQGPSEFQQEVDVLS..KMRHPNLV
  791-  882 (133.17/82.75)	RKSRPDLSTdvwrvlEPMRASCGGSSSFQLGSEEHCLPPSYFI.....CPIFQEVMRDPHVAADGFtyEAEALRGWLDSGHDTSPMTndKLAHRNLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.49|      29|      31|     232|     262|       5
---------------------------------------------------------------------------
  234-  262 (51.72/34.54)	RSNLENHF.RSLSVIPLQTSHVKPSTCTPD
  266-  295 (46.77/24.27)	RVRSENFYgRAGSVLGSTFPDGNGGLSTPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.61|      26|     357|      20|      46|       6
---------------------------------------------------------------------------
   20-   46 (39.92/33.98)	RDVIAPGIMSgRREITEEPVARVIEEK
  380-  405 (42.68/30.52)	QQVMAEAANS.RREAFEEAARRAKAEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.27|      14|     295|     418|     431|       7
---------------------------------------------------------------------------
  418-  431 (24.34/18.46)	EFLYTQELKQRKEI
  715-  728 (23.93/18.02)	EFLATGELTPKADV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00486 with Med32 domain of Kingdom Viridiplantae
Unable to open file!