<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00484

Description "U-box domain-containing protein 33, putative"
SequenceMDQMTGAAETIYVAVGKAVEESKHTLLWALQRLRPTKVCILHVHQPGNMITNNGVSSLTSRLPQHEVGKKMLDRVMNDYLLICGQKKVQAEKRHIELDDVAKGIVELIREHNIKQLVMGAAADKHFSVGMTDLKSEKAQYVDRHAPPSCQIWFICGGQFVHGRSVVETGQSNLSSPSSSSSHLPCSSKVATNSEPIVSETSEESPDWLEFHDFSNDPPFDQLDQALLDAENSNRETFEELDRRVKAEKNALNAVMRQASELKRSYTGELRRRRETEAALIKQKEELEQIKQQRDQARKIARAQKLLSESRGSNSGDIKVLEAKVSSATEQLQICQRERDELQTKLENARKQTEEHSTKQEETSSVHMQQFFSEFTVTEIHDATEDFDPSYKIAEGAYGRIYKCILRHTEVAIKVLHQNCLQGPSEFQQEVDILSKLRHPNLVTLIGVCPEIWALIYEYLPNGSLEDRLSQMNNTPPLSWQTRIHIATEICSALIFLHSSKPQRLVHGNLKPRNILLDTNFGCKLSDFGVCHALSSIKISSNMTVPSSRFPYLDPQFLTTRSLTPSSDIYSFGIILLQLITGISPLHIAENVQNALNGGYLNDLLDPSAGGWSYLQAEQLTRLALRCCDNNRSRRPDLASEVFRVLEKMRDSIGPLSTFHAGSEDHHKPPHYFICPITQEIMANPHVAADGYTYELQALREWLGRGHNTSPVINIELPHLNLVPNHALRSAILEWQQQQH
Length739
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.06
Grand average of hydropathy-0.468
Instability index54.27
Isoelectric point6.24
Molecular weight83426.51
Publications
PubMed=23731509

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00484
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.44|      43|      45|     259|     303|       1
---------------------------------------------------------------------------
  239-  284 (55.78/35.28)	ELDrRVKAEKNALN.AVMRQA...SELKRSYTGELrrRRETEAALIKQKE
  285-  329 (57.80/31.07)	ELE.QIKQQRDQAR.KIARAQkllSESRGSNSGDI...KVLEAKVSSATE
  330-  361 (44.86/22.74)	QLQ.ICQRERDELQtKLENA.................RKQTEEHSTKQEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     228.00|      50|      50|     472|     521|       2
---------------------------------------------------------------------------
  377-  411 (46.27/28.50)	.........TEIHDATE......DFDPSYK.....I.......AEGAYGRIY.KCILRHTEVA
  419-  467 (43.36/26.20)	CLQGPSEFQQEVDILSKLrHPNLVTLIGVC.....PeiwaliyEYLPNGSLEDR.........
  472-  521 (87.61/61.18)	NNTPPLSWQTRIHIATEI.CSALIFLHSSK.....P.......QRLVHGNLKPRNILLDTNFG
  523-  572 (50.76/32.05)	....KLSDFGVCHALSSIkISSNMTVPSSRfpyldP.......QFLTTRSLTPSSDIY..SFG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00484 with Med32 domain of Kingdom Viridiplantae
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