<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00483

Description "Reduced epidermal fluorescence 4, putative isoform 1"
SequenceMAVSIQAASPVWESVLEQTKSAQGKNSDPLLWAVQLSSSLNSAGVSLPSIDLAHLLVSHICWDNHVPITWKYLEKAMTVKFVPPILVLALLSTRVIPNRKFHPAAYRLYMELLRRHTFSLKCQINKPNYQKTMKSIDDVLHLSQIFGLQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTITQDMEIDTPDNFNEKRNEQLDVMYKGNTTMAIEIIGEFLQNKVTSRILFLARRNMPSHWGAFIQQLSILAAQSVALRNSKHLTPDALLQLTSDSRKVLSRECKIKSHEEFHAIIGSGCLTSSSGQCYGTSSSAHWLPIDLFLEDAMDGSQVAATGAVERLTGRVNLAGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDISEGPVPRLDTCLCMLLSITPLVVANIVEEEESELIDESDCSPTNQTKEKQAPGRCRKDLISSLQMLSDYEALLTPPQSVRSVANQAAAKAIMFISGLTVGNGYYECMSINDMPMNCSGNMRHLIVEACIARNLLDTSAYIWPGYVNARANIPCSVPSQVPGWSSLMKGSPLTPTLINALIATPASSLAEIEKIYEIATKGSDEEKISAASILCGASLVRGWNIQEHNILFITSLLSPPVPADYSGSDSHLINYAPLLNVLLVGISSVDCVQIFSLHGMVPLLAGTLMPLCEVFGSTAPTVSWTLPTGEELTSHAVFTNAFTLLLRLWRFDHPPLERVMGDATPVGSQLSPDYLLLVRNSKLLAFGKSPKDRLKIKRLSKNLNFSLDIIFMDSFPKLKCWYRQHQECIASTLSGLVQGTTVHQIVDALLNMMFRKISRGGQSFTSTTSGSSSSSASGAEDAHTRLKVPAWDILEGTPYVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSMVEQHIKKILAATGVDVPSLAVGGSSPTTLPLPLAALVSLTITYKLDKGSERFLILIGPALNSLAEGCPWPCMPIIASLWAQKVKRWNDFLVFSASRTVFHHSSDAVVQLLRSCFTSTLGLSPSIIYSNGGVGALLGHGFGSHFSGGMSPVAPGILYLRVHRSVRDIMFMTEEIVSLLMSSVREIASSGLSQEKSEKLKKTKFGLRYGQVSLGAAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHAPEKDGGEPGGVVAMLGGYALAYFAVLCGTFAWGVDSASPASKRRPKVLGAHLEFLASALDGKISLGCDSATWRAYVTGFVSLMVACTQKWVLDVDVYVLKRLSNGLRQWNEEELAMALLGLGGVGAMSAAAELIIEIGV
Length1334
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy0.164
Instability index45.19
Isoelectric point6.68
Molecular weight144884.01
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00483
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.62|      22|     124|     507|     528|       1
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  507-  528 (42.00/26.01)	PMNCSGNMRHLIVEACIARNLL
  634-  655 (39.62/24.14)	PADYSGSDSHLINYAPLLNVLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.85|      30|     343|     532|     596|       2
---------------------------------------------------------------------------
  549-  583 (50.59/68.08)	VPSQVPGWSslmkgSPLT.PTLINAL...................IATPASSLAE
  956- 1005 (37.26/25.48)	VPSLAVGGS.....SPTTlPLPLAALvsltitykldkgserflilIGPALNSLAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     179.70|      60|     343|     863|     928|       3
---------------------------------------------------------------------------
  863-  896 (43.08/19.27)	...............................................................................................................................................................................................................................................................................................................................WDILEGTPYVLDAALTACAHGRLSPRELATGLKD
  899-  928 (19.60/19.19)	DFLPATLGTIVSYfsaEVTRGIWKpAFMNG...................................................................................................................................................................................................................................................................................................................................
 1218- 1247 (29.49/10.31)	..............................tdwpspaanlsmveqhikkilaatgvdvpslavggsspttlplplaalvsltitykldkgserfliligpalnslaegcpwpcmpiiaslwaqkvkrwndflvfsasrtvfhhssdavvqllrscftstlglspsiiysnggvgallghgfgshfsggmspvapgilylrvhrsvrdimfmteeivsllmssvreiassglsqekseklkktkfglrygqvslgaamtrvklaaslgaslvwlsgglslvqsliketlpswfisahapekdggepggvvamlggyalayFAVLCGT.FAWGVD.SASPASKRRPKVLGAHL..
 1248- 1315 (87.53/46.99)	EFLASALDGKISL...GCDSATWR.AYVTG......................................................................................................................................................................................................................................................................................fvslmvactqkW.VLDVDVYVLK.RLSNGLRQW.NEEELAMALLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     299.82|      98|     322|     352|     460|       5
---------------------------------------------------------------------------
  352-  460 (153.13/104.38)	LTGRVN.LAGLVKALQAVNGTT.....W......HDTFLGLWIAALRLVQRERDISEGPVPR.LDTCLCMLLSITP...LVVANiveeeeSELIDESDcSPTNQTKEKqapgRCRKDLISSLQML
  669-  782 (146.69/78.76)	LHGMVPlLAGTLMPLCEVFGSTaptvsWtlptgeELTSHAVFTNAFTLLLRLWRFDHPPLERvMGDATPVGSQLSPdylLLVRN......SKLLAFGK.SPKDRLKIK....RLSKNLNFSLDII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.72|      43|     170|      81|     124|       6
---------------------------------------------------------------------------
   81-  124 (69.96/53.99)	FVPPILVLALLSTRVIPNRKFHPAAYrLYMELLRRHTFSLKCQI
  254-  296 (68.76/47.91)	FIQQLSILAAQSVALRNSKHLTPDAL.LQLTSDSRKVLSRECKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.38|      39|     250|     800|     850|       7
---------------------------------------------------------------------------
  800-  850 (52.53/57.53)	CIASTLsGLvQGTTVHQI..VDALLnmmfrkisrgGQSFTSTTSGSSSSSASG
 1053- 1093 (70.85/42.44)	CFTSTL.GL.SPSIIYSNggVGALL..........GHGFGSHFSGGMSPVAPG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00483 with Med33 domain of Kingdom Viridiplantae
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