<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>
Description
"Reduced epidermal fluorescence 4, putative isoform 1" Sequence MAVSIQAASPVWESVLEQTKSAQGKNSDPLLWAVQLSSSLNSAGVSLPSIDLAHLLVSHICWDNHVPITWKYLEKAMTVKFVPPILVLALLSTRVIPNRKFHPAAYRLYMELLRRHTFSLKCQINKPNYQKTMKSIDDVLHLSQIFGLQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTITQDMEIDTPDNFNEKRNEQLDVMYKGNTTMAIEIIGEFLQNKVTSRILFLARRNMPSHWGAFIQQLSILAAQSVALRNSKHLTPDALLQLTSDSRKVLSRECKIKSHEEFHAIIGSGCLTSSSGQCYGTSSSAHWLPIDLFLEDAMDGSQVAATGAVERLTGRVNLAGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDISEGPVPRLDTCLCMLLSITPLVVANIVEEEESELIDESDCSPTNQTKEKQAPGRCRKDLISSLQMLSDYEALLTPPQSVRSVANQAAAKAIMFISGLTVGNGYYECMSINDMPMNCSGNMRHLIVEACIARNLLDTSAYIWPGYVNARANIPCSVPSQVPGWSSLMKGSPLTPTLINALIATPASSLAEIEKIYEIATKGSDEEKISAASILCGASLVRGWNIQEHNILFITSLLSPPVPADYSGSDSHLINYAPLLNVLLVGISSVDCVQIFSLHGMVPLLAGTLMPLCEVFGSTAPTVSWTLPTGEELTSHAVFTNAFTLLLRLWRFDHPPLERVMGDATPVGSQLSPDYLLLVRNSKLLAFGKSPKDRLKIKRLSKNLNFSLDIIFMDSFPKLKCWYRQHQECIASTLSGLVQGTTVHQIVDALLNMMFRKISRGGQSFTSTTSGSSSSSASGAEDAHTRLKVPAWDILEGTPYVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSMVEQHIKKILAATGVDVPSLAVGGSSPTTLPLPLAALVSLTITYKLDKGSERFLILIGPALNSLAEGCPWPCMPIIASLWAQKVKRWNDFLVFSASRTVFHHSSDAVVQLLRSCFTSTLGLSPSIIYSNGGVGALLGHGFGSHFSGGMSPVAPGILYLRVHRSVRDIMFMTEEIVSLLMSSVREIASSGLSQEKSEKLKKTKFGLRYGQVSLGAAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHAPEKDGGEPGGVVAMLGGYALAYFAVLCGTFAWGVDSASPASKRRPKVLGAHLEFLASALDGKISLGCDSATWRAYVTGFVSLMVACTQKWVLDVDVYVLKRLSNGLRQWNEEELAMALLGLGGVGAMSAAAELIIEIGV Length 1334 Position Tail Organism Theobroma cacao (Cacao) (Cocoa) Kingdom Viridiplantae Lineage Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity 0.07 Grand average of hydropathy 0.164 Instability index 45.19 Isoelectric point 6.68 Molecular weight 144884.01 Publications PubMed=23731509
Function
Annotated function
GO - Cellular Component integral component of membrane GO:0016021 IEA:UniProtKB-KW
mediator complex GO:0016592 IEA:InterPro
GO - Biological Function GO - Biological Process regulation of phenylpropanoid metabolic process GO:2000762 IEA:InterPro
Interaction
Repeat regions
Repeats
>MDP00483
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 81.62| 22| 124| 507| 528| 1
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507- 528 (42.00/26.01) PMNCSGNMRHLIVEACIARNLL
634- 655 (39.62/24.14) PADYSGSDSHLINYAPLLNVLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 87.85| 30| 343| 532| 596| 2
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549- 583 (50.59/68.08) VPSQVPGWSslmkgSPLT.PTLINAL...................IATPASSLAE
956- 1005 (37.26/25.48) VPSLAVGGS.....SPTTlPLPLAALvsltitykldkgserflilIGPALNSLAE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 179.70| 60| 343| 863| 928| 3
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863- 896 (43.08/19.27) ...............................................................................................................................................................................................................................................................................................................................WDILEGTPYVLDAALTACAHGRLSPRELATGLKD
899- 928 (19.60/19.19) DFLPATLGTIVSYfsaEVTRGIWKpAFMNG...................................................................................................................................................................................................................................................................................................................................
1218- 1247 (29.49/10.31) ..............................tdwpspaanlsmveqhikkilaatgvdvpslavggsspttlplplaalvsltitykldkgserfliligpalnslaegcpwpcmpiiaslwaqkvkrwndflvfsasrtvfhhssdavvqllrscftstlglspsiiysnggvgallghgfgshfsggmspvapgilylrvhrsvrdimfmteeivsllmssvreiassglsqekseklkktkfglrygqvslgaamtrvklaaslgaslvwlsgglslvqsliketlpswfisahapekdggepggvvamlggyalayFAVLCGT.FAWGVD.SASPASKRRPKVLGAHL..
1248- 1315 (87.53/46.99) EFLASALDGKISL...GCDSATWR.AYVTG......................................................................................................................................................................................................................................................................................fvslmvactqkW.VLDVDVYVLK.RLSNGLRQW.NEEELAMALLG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 299.82| 98| 322| 352| 460| 5
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352- 460 (153.13/104.38) LTGRVN.LAGLVKALQAVNGTT.....W......HDTFLGLWIAALRLVQRERDISEGPVPR.LDTCLCMLLSITP...LVVANiveeeeSELIDESDcSPTNQTKEKqapgRCRKDLISSLQML
669- 782 (146.69/78.76) LHGMVPlLAGTLMPLCEVFGSTaptvsWtlptgeELTSHAVFTNAFTLLLRLWRFDHPPLERvMGDATPVGSQLSPdylLLVRN......SKLLAFGK.SPKDRLKIK....RLSKNLNFSLDII
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 138.72| 43| 170| 81| 124| 6
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81- 124 (69.96/53.99) FVPPILVLALLSTRVIPNRKFHPAAYrLYMELLRRHTFSLKCQI
254- 296 (68.76/47.91) FIQQLSILAAQSVALRNSKHLTPDAL.LQLTSDSRKVLSRECKI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 123.38| 39| 250| 800| 850| 7
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800- 850 (52.53/57.53) CIASTLsGLvQGTTVHQI..VDALLnmmfrkisrgGQSFTSTTSGSSSSSASG
1053- 1093 (70.85/42.44) CFTSTL.GL.SPSIIYSNggVGALL..........GHGFGSHFSGGMSPVAPG
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Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP00483 with Med33 domain of Kingdom Viridiplantae
Intrinsically Disordered Regions
IDR Sequence Start Stop
NA NA NA
