<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00481

Description "REF4-related 1, putative isoform 2"
SequenceMAVSIQAASPVWESVLEQTKSAQGKNSDPLLWAVQLSSSLNSAGVSLPSIDLAHLLVSHICWDNHVPITWKYLEKAMTVKFVPPILVLALLSTRVIPNRKFHPAAYRLYMELLRRHTFSLKCQINKPNYQKTMKSIDDVLHLSQIFGLQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTITQDMEIDTPDNFNEKRNEQLDVMYKGNTTMAIEIIGEFLQNKVTSRILFLARRNMPSHWGAFIQQLSILAAQSVALRNSKHLTPDALLQLTSDSRKVLSRECKIKSHEEFHAIIGSGCLTSSSGQCYGTSSSAHWLPIDLFLEDAMDGSQVAATGAVERLTGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDISEGPVPRLDTCLCMLLSITPLVVANIVEEEESELIDESDCSPTNQTKEKQAPGRCRKDLISSLQMLSDYEALLTPPQSVRSVANQAAAKAIMFISGLTVGNGYYECMSINDMPMNCSGNMRHLIVEACIARNLLDTSAYIWPGYVNARANIPCSVPSQVPGWSSLMKGSPLTPTLINALIATPASSLAEIEKIYEIATKGSDEEKISAASILCGASLVRGWNIQEHNILFITSLLSPPVPADYSGSDSHLINYAPLLNVLLVGISSVDCVQIFSLHGMVPLLAGTLMPLCEVFGSTAPTVSWTLPTGEELTSHAVFTNAFTLLLRLWRFDHPPLERVMGDATPVGSQLSPDYLLLVRNSKLLAFGKSPKDRLKIKRLSKNLNFSLDIIFMDSFPKLKCWYRQHQECIASTLSGLVQGTTVHQIVDALLNMMFRKISRGGQSFTSTTSGSSSSSASGAEDAHTRLKVPAWDILEGTPYVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSMVEQHIKKILAATGVDVPSLAVGITLYHYICSLP
Length967
PositionTail
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.07
Grand average of hydropathy0.082
Instability index44.11
Isoelectric point6.08
Molecular weight106085.23
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00481
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.50|      68|     337|     255|     393|       1
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  173-  253 (102.24/92.20)	LDDEGLLELTPEKRSIwptITQDMEIDT..............................P.DNFNEKRNEQLDVMYKGnttmAIE.IIG..EFLQ..NKVTSRILFLarrnmpSHWGA
  274-  377 (84.26/150.95)	LTPDALLQLTSDSRKV...LSRECKIKSheefhaiigsgcltsssgqcygtsssahwlPiDLFLEDAMDGSQVAATG....AVErLTGlvKALQavNGTTWHDTFL......GLWIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.33|      32|     336|     518|     590|       2
---------------------------------------------------------------------------
  396-  431 (51.51/14.10)	LDTClcmlLSITPLVV...ANI...VEEE...ESELIDESDCSPT
  522-  562 (46.83/67.47)	LDTS....AYIWPGYVnarANIpcsVPSQvpgWSSLMKGSPLTPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00481 with Med33 domain of Kingdom Viridiplantae
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