<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00480

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMDPEGKKFGKGPRELSGAVDLISHYKLLPHHDFFCKRPLPLSISDTHYLHNVVGDTEIRKGEGMQLDQLIQNTSHNRDTNARIQPFDLDILKEAFQLRESTPVELPSSEKGIPTIAGKSKSEAKDKERKHKKHKDRDKEKDKEHKRHKHRHKDKDRTKDKDKEKKKDRSGHHDSGADHSKKHHEKKRKHDGDEDLNDVHRHKKSKQKSSKIDEVGAIKVAG
Length221
PositionHead
OrganismTheobroma cacao (Cacao) (Cocoa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Byttnerioideae> Theobroma.
Aromaticity0.03
Grand average of hydropathy-1.552
Instability index34.64
Isoelectric point9.56
Molecular weight25536.38
Publications
PubMed=23731509

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00480
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.96|      15|      15|     124|     138|       1
---------------------------------------------------------------------------
  124-  138 (27.36/ 7.64)	KDKERKHKKHKDRDK
  140-  154 (27.60/ 7.76)	KDKEHKRHKHRHKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.15|      18|      19|     171|     189|       2
---------------------------------------------------------------------------
  171-  188 (33.32/15.78)	HHDSGADH.SKKHHEKKRK
  192-  210 (25.83/ 6.56)	DEDLNDVHrHKKSKQKSSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00480 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRESTPVELPSSEKGIPTIAGKSKSEAKDKERKHKKHKDRDKEKDKEHKRHKHRHKDKDRTKDKDKEKKKDRSGHHDSGADHSKKHHEKKRKHDGDEDLNDVHRHKKSKQKSSKIDEVGAIKVAG
2) VVGDTEIRKGEGMQLDQLIQNTSHNRDTNARIQPFD
97
52
221
87










Molecular Recognition Features






MoRF SequenceStartStop




1) DKERKHKKHKDRDKEKDKEHKRHKHRHKDKDRTKDKDKEKKKDRSGHHDSGADHSKKHHEKKRKHDGDEDLNDVHRHKKS
2) SKIDEVGAIKVAG
125
209
204
221