<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00458

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLLAISKFDDFSRELCVKSLLEIMDMFCHRLSCHGKAEECIGLCRALLGVVVWLLTGCACYCERLRELGPSASTEANLRACLERLRELVNSQKNRALVHIARLEDQASWTNVEQALIKVTEGLNSLTNQTLRGKLEECISLVKSIPTILSEQSDPPHQSLFPSVHAFIMLEGTMNLTGETQPLVEQLMMIKRMQRIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGEKVQQDFMDDVNIAFEYLLKLTPLLDKADQRCNCDCLSMLLQECNKLSLLSDSNTTNLTSKREYAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNNSSEMKLVQMKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGLDEREKPQTMIRQLMTPLYGENTLQFYNERVVIMSSILENMCADVFQQTGLALRPPMEGQEPIPYRNLLSAKEPIHEALRKQFRSVLWKGWVDSGALHLFESLLHTGGVFWFTNNLIKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGHILPNLLTDSAHWHSLADPPGKALAKLSVWCALSSFSTHHKGQASARQRKRQREDIEDYSSLFPLDDTQPSKLMRLLSSNEDEPVVLSSPGQFAVFWCQRKYISGRFSGQTL
Length893
PositionTail
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.08
Grand average of hydropathy-0.089
Instability index43.66
Isoelectric point6.60
Molecular weight100531.59
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00458
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.94|      13|      15|      79|      93|       1
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   79-   93 (19.82/20.97)	LLAIskFDDFSREL.C
   97-  110 (23.12/16.03)	LLEI..MDMFCHRLsC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.27|      23|     114|     661|     684|       2
---------------------------------------------------------------------------
  661-  684 (37.87/25.68)	IMSSILENMCADVFQQTGLAlRPP
  779-  801 (43.40/25.38)	LLGHILPNLLTDSAHWHSLA.DPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.76|      24|     114|     418|     443|       3
---------------------------------------------------------------------------
  223-  249 (36.51/20.46)	PTILSEQSDPPHQSLFPSVHafiMLEG
  418-  441 (41.25/32.51)	KTVDADHSKSPEGLLGVLGH...MLSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.16|      17|      17|     140|     156|       4
---------------------------------------------------------------------------
  140-  156 (29.18/16.05)	ERLRELGPSASTEANLR
  160-  176 (27.97/15.13)	ERLRELVNSQKNRALVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.63|      16|      16|     703|     718|       5
---------------------------------------------------------------------------
  703-  718 (27.99/18.47)	IHEALRKQFRSVLWKG
  720-  735 (26.64/17.22)	VDSGALHLFESLLHTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.23|      13|     192|     564|     577|       8
---------------------------------------------------------------------------
  564-  576 (24.40/16.62)	KLVQMKWHEICLS
  582-  594 (21.83/ 8.66)	LEVLNAWENGVLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00458 with Med24 domain of Kingdom Metazoa
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