<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00449

Description Uncharacterized protein
SequenceMDLPIKPGANQVADVVFVIEGTANLGPYFESLRKHYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQMGVKTKCNSQYLVWPPAALSTAVHLLIDCTNCASSCCEMSSLRWPWQNTDIPVLQEITHRMSSMAGGIVMLEGHVRMSLQEGYHMREEDVFPVLLHVVCHRGDQLSVLSPCSAVLGISQYGHCYLLPWPHLQSSCLLAACLRHIHADEQRPWASFFWCFSESVERPLYHVSIDAAFRLDLYIFLVQVRILLDHILVSSNPRESSQMLADQSGIDPLKMNAAYFPVGLAPSILFTMFHWQRYFACWVISNMEKPKASSMDSNTKLTRSLPCQVQVNQGENLNADQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFLFTNKDVESLKGLYRIMATGFAGCVHFPHSAPCEVRVLMLLYSSKKRIFMGLIPNDQSGFVNGIRQVITNHKQVQQHRSLGSGGPMPGPPGQVQPNQNFLNRPQGPIPVSHGNVQQQMTMRASGAPNQQPPVTGAPPNQVAQGGQAPPQGAMLRLPNPGANPQLRSLLLSQQQPQGGVGHMQGMMPHQGLGGQLVHPTPGAGPQMQAQWRQPLAGQMMMAAGQRGPGAQPPGMPQVSSVMEDEILMDLI
Length694
PositionUnknown
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.08
Grand average of hydropathy-0.115
Instability index50.29
Isoelectric point6.53
Molecular weight76434.26
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00449
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.87|      17|      18|     523|     539|       1
---------------------------------------------------------------------------
  523-  539 (32.87/11.08)	RSLGSGGPMPGPPGQVQ
  592-  608 (26.96/ 7.91)	PPQGAMLRLPNPGANPQ
  664-  680 (30.04/ 9.56)	MAAGQRGPGAQPPGMPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.59|      20|      21|     619|     639|       2
---------------------------------------------------------------------------
  619-  639 (36.70/22.86)	PQGGVG.HMQGMMpHQGLGGQL
  642-  662 (36.89/18.07)	PTPGAGpQMQAQW.RQPLAGQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.86|      27|      70|     418|     453|       3
---------------------------------------------------------------------------
  418-  444 (45.60/31.58)	QKLIMQLIPQQ...LLTTLGPLFRNSRMVQ
  491-  520 (39.26/13.80)	KRIFMGLIPNDqsgFVNGIRQVITNHKQVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.34|      20|     105|     256|     285|       5
---------------------------------------------------------------------------
  143-  177 (32.32/10.98)	LVWPpaalstavHLlidctncASSCCEMSSLR.......WPW
  257-  283 (38.01/30.02)	LPWP........HL.......QSSCLLAACLRhihadeqRPW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00449 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HKQVQQHRSLGSGGPMPGPPGQVQPNQNFLNRPQGPIPVSHGNVQQQMTMRASGAPNQQPPVTGAPPNQVAQGGQAPPQGAMLRLPNPGANPQLRSLLLSQQQPQGGVGHMQGMMPHQGLGGQLVHPTPGAGPQMQAQWRQPLAGQMMMAAGQRGPGAQPPGMPQVSSVME
516
686










Molecular Recognition Features






MoRF SequenceStartStop




NANANA