<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00428

Description Uncharacterized protein
SequenceMSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRCLAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHHELSSEEDGEWESGLSYECRTLLFKAVHNLLERCLMNRSFVRIGKWFVKPYEKDEKPVNKSEHLSCAFTFFLHGDSNVCTSVEIAQHQPVQRLGEEHLSLAQQNASPLQVILSPYGLNGTVTGQSFKMSDHPTQKLIEEWRQFYPISPSSKDRPEDKMEDADWEDDSLAAVEVLVAGVRMVYPACLVLVPQSDLPALAPQGSANPSPVLCEGLGAHRDPAMSSVTLTPPTSPEEAQTDSQAAQRWLKLCSTVDGFSSNSSGIHGSKIPRRLAAQVVESVWQECTTNRAQNKRKFATLTNGTCEEEEGDKTGVWDFVEFSHRAHCNCSRHKNQKQRSGSTSGNPPSVGQPSQLLPKHKLGEKLEKGEKQQKRPQTPFHHRSYVFEEQAMEPQRLCMRTQDEGPYPSLHHVDTAPSKAPMLHTHRPLQDLAGSPQPPPLSPHPCERGEEDPGAMKSSSTPIHQHFYPPSSEPCLLPQKTSPDEPHLEPLPLPFPPAYPDSLEPTVYVGSAINPNEDSAHNPWKYFNLPRKKTSNFFTPLLPVDKLQDDSGEGGQENIVSVTELMSGSGRPLKVSEDLVRTYTQRRNSHLVAAMADEDQEEEPDPYAFVEGDEDFTFTDKKDKPGSDRETSKRHKGDDGSGTSADGEHFLLWLLRGLSLFVFLCVCADGQGAAGGKPVPSTSLIHETDLAVSINDLDNLFNSDEDELAQPGSRRAGVHGDKFGSKEHKTSNLDPLSCISSADLHKMFPTPPSLEQHIMGYSPMNTGGKDYGGLEAGVGLTLLDGSQFSSHYKMEVEEGFCSPKPSEIKDFSFVYKSEACKAFTGCSMFAPLKMLPSQCMMPIKLPEDCVYTPSWNMGKLELIPPVPTMGLLTKDGNIPSVEPDYQSYTPQTHTPFMSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYDNSDLYSPASTPSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMNIRGADVGVYLNDNGEAQYPCTCGFSAVVNRRYGSSAGLFLEDELDVVGRGSDAGRDSERRFQELRAASLHRTGNPTERPPDELILLLQDQCTNPFSRMAGVEYPKALSSGPSHSSLRVEERDCYNDCYMALEHGRQFMDNMSGGKVDEVLVKSTCLHNWPKRKAAEVSRLFSQDVLRVLLSLQPVLQDAIQKKRSVRSWGVQGPLTWQQFHKMAGRGSYGKHKDFKNQAIIIHKDTGFFLDQKQA
Length1347
PositionMiddle
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.08
Grand average of hydropathy-0.553
Instability index59.05
Isoelectric point5.67
Molecular weight149194.03
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00428
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.06|      30|      31|    1001|    1031|       1
---------------------------------------------------------------------------
  968-  996 (48.69/20.80)	GNIPS.VEPDYQ.SYTPQT.HTPfMSNSAPPS
 1001- 1030 (57.51/26.54)	GILPSPATPRFS.APTPRTPRTP.RTPRGPAS
 1033- 1062 (45.87/20.10)	GSLKYDNSDLYSpASTPSTCR.P.LSSVEPAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.75|      27|      30|     537|     566|       2
---------------------------------------------------------------------------
  539-  566 (46.10/32.88)	ERGEEDPGAMKSSSTPIHQHfYPPSSEP
  571-  597 (51.66/24.43)	QKTSPDEPHLEPLPLPFPPA.YPDSLEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.24|      28|      37|      21|      52|       3
---------------------------------------------------------------------------
   21-   52 (41.09/39.74)	CLA.DLTGIkWRRFvwQGPTSSPI.LFpVTEEDP
   60-   89 (50.14/29.29)	CLAaDVLSV.WRRH..HTPGRRELwLF.WWGDDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.74|      14|      33|     150|     163|       4
---------------------------------------------------------------------------
  150-  163 (26.37/16.58)	DEKPVNK..SEHLSCA
  182-  197 (21.37/11.96)	QHQPVQRlgEEHLSLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.10|      27|      33|     442|     474|       5
---------------------------------------------------------------------------
  442-  474 (37.46/38.41)	VGQPSQLLPKhKLGEKlekgeKQQKRPQTPFHH
  478-  504 (49.63/31.26)	VFEEQAMEPQ.RLCMR.....TQDEGPYPSLHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.62|      39|      39|     270|     308|       6
---------------------------------------------------------------------------
  232-  269 (50.17/27.42)	LIEEWRQFYP......ISPSSkDRPedKMEDADW..EDDSLAAV...EV
  270-  308 (68.53/40.52)	LVAGVRMVYPA..CLVLVPQS.DLP..ALAPQGS..ANPSPVLC...EG
  309-  350 (45.91/24.38)	LGAHRD...PAmsSVTLTPPT.S.P..EEAQTDSqaAQRWLKLCstvDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.78|       9|      32|     731|     740|       7
---------------------------------------------------------------------------
  731-  740 (12.36/ 9.26)	DGSGtSADGE
  761-  769 (16.42/ 7.11)	DGQG.AAGGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.66|      25|      40|     372|     396|       8
---------------------------------------------------------------------------
  372-  396 (44.52/29.10)	VE.SVWQECTTNRAQNKRKFATLTNG
  412-  437 (42.14/27.12)	VEfSHRAHCNCSRHKNQKQRSGSTSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.20|      18|      31|     910|     928|      12
---------------------------------------------------------------------------
  910-  928 (30.12/25.63)	EACkAFTGCSMFAPLKMLP
  939-  956 (35.09/24.67)	EDC.VYTPSWNMGKLELIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00428 with Med13 domain of Kingdom Metazoa
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