<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00417

Description Uncharacterized protein
SequenceMSSRDSNFCTETGCVYLFFSLPLSPSLPPVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFYPISPSSKDKDKNDSPSEDKMEYMDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPAVVPQGSSHCTAIYSGGHQVPASQRDPAISSVTLTPPTSPEDAHTGTMMDSQSALKWVKMSSAVDGFSVDSTSHHELKIPRRLASQVVERVWQECNINRAQNKRKLSVTVNGTCEEELMEKVGAWDFVESTHRSNCNCSRHKALKQRGGCTPGQPQSAGQPTHTQPPTKHKTGGDKPEKSDKQTKRPQTPFHHRSAACDDVTMETKAAGRRLAMRAQQEGGRFPGLHPTDGVTKTPQRHDGGVGSAGGSSEMTGSPQPPPLSPHPCERDRGEETGDGSLKNPSTPHSQHFYQPPPEPCLAEQKGGIGDHRGLDGLAQHFHHTAYPPEPLEPTVYVSSAVNLEEDGSPAPWRFFNLPRRKEAAIPTPTLPWDKLRDRERDEASGGHEVVSVTE
Length513
PositionMiddle
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.06
Grand average of hydropathy-0.758
Instability index65.67
Isoelectric point6.03
Molecular weight55977.72
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00417
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.15|      10|      28|     409|     418|       2
---------------------------------------------------------------------------
  409-  418 (24.53/11.54)	QHFYQP..PPEP
  438-  449 (19.62/ 7.84)	QHFHHTayPPEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.52|      24|      33|     207|     235|       3
---------------------------------------------------------------------------
  207-  235 (39.24/37.71)	QVVERV..WQ........ECNINRAQNKRKlsvtvNGTC
  238-  271 (35.29/22.85)	ELMEKVgaWDfvesthrsNCNCSRHKALKQ.....RGGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.41|      18|      26|     273|     292|       4
---------------------------------------------------------------------------
  282-  304 (27.09/11.24)	PTHTQPPTKHK........................tggdkP.E.KSDKQ
  305-  353 ( 8.33/ 7.55)	TKRPQTPFHHRsaacddvtmetkaagrrlamraqqeggrfPgLhPTDGV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00417 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAIPTPTLPWDKLRDRERDEASGGHEVVSVTE
2) CNCSRHKALKQRGGCTPGQPQSAGQPTHTQPPTKHKTGGDKPEKSDKQTKRPQTPFHHRSAACDDVTMETKAAGRRLAMRAQQEGGRFPGLHPTDGVTKTPQRHDGGVGSAGGSSEMTGSPQPPPLSPHPCERDRGEETGDGSLKNPSTPHSQHFYQPPPEPCLAEQKGGIGDHRGLDGLAQHFHHTAYPPEPLEPTVYVSSAVNL
482
257
513
462










Molecular Recognition Features






MoRF SequenceStartStop




1) APWRFFNLPRRKEAAIPTPTLPWDKLRDRERD
2) KLIEEWNQFY
469
55
500
64