<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00416

Description Uncharacterized protein
SequenceMSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRCLAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHHDLSSEEEGEWESGLSYECRTLLFKAVHNLLERCLMNRSFVRIGKWFVKPYEKDEKPISKSEHLSCAFTFFLHGDSNVCTSVEIAQHQSVQRLSEEHLSLAQQNASPLQVILSPYGLNGTVTGQSFKMSDHPTQKLIEEWRQFYPISPSAKDRPEDKMEDADWEDDSLAAVEVLVAGVRMVYPACLVLVPQSDLPALAPQGSANPSAILCEGQGTHRDHAMSSVTLTPPTSPEEAQTDHQAAQRWLKLCLTVDGFSSNSSGIHGSKIPRRLAAQVVESVWQECTTNRAQSKRKFATLTNGTCEEEEGDKTGVWDFVESSHRAHCNCSRHKNQKQRSGSTSGNPPSVGKPPQPPPKHKLGEKLDKGEKQQKRPQTPFHHRSYVFEEQAMEPRRLCIRTQDEGPYPSLHHIDTAPSKAPMLHTHGTPQDLAGSPQPPPLSPHPCEHGEEDPGAMKSSSTPIHQHFYPPSSEPCLLPQKTLSDLPLPFPHTYAESLEPTAYVGSAINPNEDSAHNPWKYFNLPRKKASDFLTPLLPVDKLQDDSGGGGGQENIVSVTELMSGSGRPLKVSDDLVRTYTQRRNSHLAAAMADEDHEEEPDPYAFVEGDEEFTFTDKKDKPGSERETSKRHKVSFKHDGISIKWSSRVVTDGTSFVCADGQGAAGGKPIPSTSLIHETDLAVSINDLDNLFNSDEDELAPGSRRAGVHGDKFGSKEHKTSNLDPLSCISSADLHKMFPTPPSLEQHIMGYSPMNTGGKDYGGQEGGLGLTLLDGSQFSSHYKMEVEEGFCSPKPSEIKDFSFVYKSEACKAFTGCSMFAPLKMLPSQCMMPIKLPEDCVYTPSWTMGKLELIPPVPSMGLLTKDGNIPSVEPDYQSYTPQTHTPFMSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYDNSDLYSPASTPSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMNIRGADVGVYLNDNGEAQYPCTCGFSAVVNRRYGSSAGLFLEDELDLVGRDSDAGRDSERRFQELHAASLHRTGNPKERPPDELILLLQDQCTNPFSPMAGVKYPRALSSGPSRFSLRVEERDCYNDCYMALEHGRQFMDNMSGGKVDEALVKSTCLHNWPKRKAAEVSRLFSQDVLRVLLSLQPVLQDAIQKKRSIRSWGVQGPLTWQQFHKMAGRGSYGKHKEDDDNNTT
Length1321
PositionMiddle
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.07
Grand average of hydropathy-0.586
Instability index59.24
Isoelectric point5.79
Molecular weight146124.31
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00416
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.64|      25|      35|     945|     975|       1
---------------------------------------------------------------------------
  956-  987 (41.04/15.12)	GNIPS.VEPDYQSYTPQT.HTP................fmsnsaP.PSnSG
  989- 1038 (18.60/ 7.26)	GILPSpATPRFSAPTPRTpRTPrtprgpasvqgslkydnsdlysPaST.PS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.56|      28|      36|      30|      64|       2
---------------------------------------------------------------------------
   21-   59 (35.43/40.21)	CLA.DltgikWRRFvwQGPTSSPI.LFpVTEEDPilcSFSR
   60-   93 (46.13/30.84)	CLAaD.vlsvWRRH..HTPGRRELwLF.WWGDDP...SFAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     216.96|      40|      40|     515|     554|       3
---------------------------------------------------------------------------
  435-  471 (45.96/18.76)	..TSG.......NPPSVGKP..PQPP....P..KH...KLGEKlDKGekQ.QKRPQTP
  473-  513 (42.40/16.68)	HHRSYvfeeqamEPRRLCIR..TQDE......GPYPSlHHIDT.AP........SKAP
  515-  554 (78.86/38.04)	LHTHG.......TPQDLAGS..PQPP....PLSPHPC.EHGEE.DPG..A.MKSSSTP
  555-  601 (49.75/20.98)	IHQHF.......YPPSSEPCllPQKTlsdlPL.PFPH.TYAESlEPT..AyVGSAINP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.34|      37|      40|     725|     762|       5
---------------------------------------------------------------------------
  725-  762 (60.75/40.82)	SFKHD...GISIKWSSRVVTDGTSFVcADGQGAAG..GKPIPS
  764-  805 (52.59/29.68)	SLIHEtdlAVSINDLDNLFNSDEDEL.APGSRRAGvhGDKFGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.88|      17|      40|     372|     388|       6
---------------------------------------------------------------------------
  372-  388 (30.81/19.69)	VESVWQ...ECTTNRAQSKR
  412-  431 (26.07/15.47)	VESSHRahcNCSRHKNQKQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.55|      18|      40|     232|     250|       7
---------------------------------------------------------------------------
  232-  250 (31.16/21.30)	LIEEWRQFYP....ISPSAkDRP
  270-  291 (27.39/13.71)	LVAGVRMVYPaclvLVPQS.DLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00416 with Med13 domain of Kingdom Metazoa
Unable to open file!