<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00411

Description Uncharacterized protein
SequenceMSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILCSFSRCLKADILSVWRRSQRPGRRELWLFWWGDDPNFAELIHHELTATVVDGQRPSLFMLFGWEIELLSLSHDTHTCTQTHSRPVALLHYDRLCLKWAGTEEDGVWESGLSYECRTLLFKAIHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKR
Length210
PositionMiddle
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.12
Grand average of hydropathy-0.260
Instability index58.21
Isoelectric point6.70
Molecular weight24500.92
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00411
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.73|      46|     124|      16|      61|       1
---------------------------------------------------------------------------
   16-   61 (88.07/45.99)	HSNLFCLADLTGIKW....KRYVWQGPTS...APILFPVTEEDPILCSFSRCL
   63-   95 (53.88/25.80)	.......ADILSV.W....RRS..QRPGR...RELWLFWWGDDP...NFAELI
  143-  184 (52.78/25.15)	HYDRLCL......KWagteEDGVWESGLSyecRTLLFKA.....IHNLLERCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.25|      13|      27|      96|     109|       2
---------------------------------------------------------------------------
   96-  109 (19.47/19.52)	HHELTATVVDGqRP
  126-  138 (26.78/20.62)	HDTHTCTQTHS.RP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00411 with Med13 domain of Kingdom Metazoa
Unable to open file!