<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00406

Description Uncharacterized protein
SequenceMTTASATPQQMRDRLLQAIDSRSNQIHNMVAVLEVITYLEKFPITKEALEETRLGKLINDVRKKTKDKDLAKRAKKLLRSWQKLIDPGQNETPSWGAVSVSGSANGSAHPCRTDVPPPDISLAGKGVQEVKTRNDVHNTYSPKVEKSSSRKRRGEQKDSVHLPAKTSKMSPNEQMHNSTPPPPPTNGIAGNPEAPQDLEATPSPDRARTKHIENEKHSGIPVNAVKPHPSSPGLAKLPSTSSLLKTAVLQQQARLDEGGGQYLTKSPRCLSSPRTMKQETMSKHSSTYAPKGTIPSPARSPRLPSSQPLTSPAQVSHVNGPPPPAHRASLHWPGSSEATTNPPHSTGTLEPPPVFLPTTHPAPQNSECAELHRPTPSVVVVKAEAEVSASSSDRKKRKKYRSRDYSVNLQGQDTEDKTKPVRLKERRLTFDPVTGQIKSMVHKEPCQVEEPPMPPPPNPQQRTDLHPQQPPAPTPSPFQQTNWKELSRNEIIQSYLNLQSNVLTSSRVQAPGAHFFMSEYLKREESDLREARRGVHVLQLESSVTDTPGVSREVTDKDLHRVHTEHWQGVNGCYDTKGTWFDWTECISLDPHGDESKLNILPYICLD
Length607
PositionUnknown
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.04
Grand average of hydropathy-0.889
Instability index65.20
Isoelectric point9.27
Molecular weight67163.76
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00406
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     604.02|     131|     132|     212|     343|       1
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   50-  205 (150.34/54.49)	..EETRLGKLINDVRKKTKDKDLAK....RAKKLLRS....WQ.....KLIDP..GQNETPSWGAVSvsgsangsaHPcRTdvpppdislagkGV...QEvkTRNDVHN........TYSP.KVE.KSSSRKRRgeqkdsvhLPAKTSKMSPNEQMHNSTPPP..PPTNgiaGNPEAPQDLEATPSPD
  212-  343 (225.50/87.47)	IENEKHSGIPVNAVKPHPSSPGLAKL..PSTSSLLKTaVLQQQ.....ARLDEGGGQYLTKSPRCLS.........SP.RT............MK...QE..TMSKHSS........TYAP.KGTIPSPARSPR........LPSSQPLTSPAQVSHVNGPPP..PAHR...ASLHWPGSSEATTNPP
  349-  477 (155.77/56.70)	LEP...PPVFLPTTHPAPQNSECAELhrPTPSVV....VVKAE.....AEVSASSSDR.KKRKKYRS.........RD.YS............VNlqgQD..TEDKTKPvrlkerrlTFDPvTGQIKSMVHK..................EPCQVEEPPMPPPpnPQQR...TDLH.PQQPPAPTPSP
  478-  569 (72.42/22.63)	.......................................FQQTnwkelSR.NEIIQSYLNLQSNVLT.........SS.R.............VQ...AP..GAHFFMS........EYLK.RE..ESDLREAR...rgvhvLQLESSVTDTPGVSR.EVTDK..DLHR..vHTEHWQG.........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00406 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQNETPSWGAVSVSGSANGSAHPCRTDVPPPDISLAGKGVQEVKTRNDVHNTYSPKVEKSSSRKRRGEQKDSVHLPAKTSKMSPNEQMHNSTPPPPPTNGIAGNPEAPQDLEATPSPDRARTKHIENEKHSGIPVNAVKPHPSSPGLAKLPSTSSLLKTAVLQQQARLDEGGGQYLTKSPRCLSSPRTMKQETMSKHSSTYAPKGTIPSPARSPRLPSSQPLTSPAQVSHVNGPPPPAHRASLHWPGSSEATTNPPHSTGTLEPPPVFLPTTHPAPQNSECAELHRPTPSVVVVKAEAEVSASSSDRKKRKKYRSRDYSVNLQGQDTEDKTKPVRLKERRLTFDPVTGQIKSMVHKEPCQVEEPPMPPPPNPQQRTDLHPQQPPAPTPSPFQQTNWK
88
484










Molecular Recognition Features






MoRF SequenceStartStop




1) KLLRSWQKL
76
84