<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00401

Description Uncharacterized protein
SequenceMYISYNWSPVRPQNLEVLPFVTFSLHRAPGDAELKGSGFSHPASLDDDDIGSKKSGGHTVSIETASLDMYAKYVLKSICQQELYSLLENIATVTIEVFQKSAEMNSNNPSGNISAGAGSSTSNSNNTSKMKPVLSSSERTGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLYSQVQQIVTNWREDQYQDDCKAKQMMHEALKLRLNLVGGMFDTVQRSTQQTTEWAVLLLDIISSGTVDMKSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLRKELGDRQSESLEKVRQLLPLPKQTRDVITCEPQGSLIDTKGNKIAGFEKEGLQVSNKQKISPWDVFEGLKHSAPLSWGWFGTVRVDRKVTKFEEQQRFLLYHTHLKPKPRSYYLEPLPLPPEEEEPPTPVPQELEKKMVEALKPEKSVPVLSSDVTKKKPKKKKTPSTSKTEVRGRHWDRSCPAKLR
Length525
PositionKinase
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.06
Grand average of hydropathy-0.575
Instability index49.37
Isoelectric point9.01
Molecular weight58786.47
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00401
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.51|      10|      15|     101|     110|       1
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  101-  110 (19.42/16.08)	SAEMNSNNPS
  119-  128 (18.10/14.42)	SSTSNSNNTS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.61|      13|      15|     378|     391|       2
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  378-  391 (18.38/15.43)	KgNKIAGFEK.EGLQ
  395-  408 (20.23/11.21)	K.QKISPWDVfEGLK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.45|      14|      23|     278|     291|       3
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  278-  291 (23.86/15.77)	LLDIISSGTV..DMKS
  302-  317 (19.59/11.72)	MLSVLINGTLaaDMSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.87|      14|      15|     477|     490|       4
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  477-  490 (22.92/12.27)	VEALKP.EKSVPVLS
  493-  507 (18.95/ 8.90)	VTKKKPkKKKTPSTS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.49|      27|     156|     179|     205|       5
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  179-  205 (47.67/29.90)	RKE.RDRQK...QKSMSLLSQQPFLSLVLTC
  338-  368 (38.83/23.03)	RKElGDRQSeslEKVRQLLPLPKQTRDVITC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00401 with Med12 domain of Kingdom Metazoa
Unable to open file!