<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00380

Description Uncharacterized protein
SequenceMSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYREKLAHQQAAGAGSASGTQGPQPGSTKNGEGGTAANGEENGAHALANHHADMMEVDGDVEIPQNKAMVLRGHESEVFICAWNPVNDLLASGSGDSTARIWNLSENSTGSSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPVKTFQGHTNEVNAIKWDPTGSLLASCSDDMTLKIWSMKQDSCVHDLQAHSKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVERGVCIHTLTRHQEPVYSVAFSPDGRHLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNATGDKVGASASDGSVCVLDLRK
Length517
PositionTail
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Oncorhynchus.
Aromaticity0.07
Grand average of hydropathy-0.323
Instability index34.62
Isoelectric point5.44
Molecular weight55821.45
Publications
PubMed=24755649

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00380
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     389.70|      40|      40|     325|     364|       1
---------------------------------------------------------------------------
  144-  177 (27.07/10.90)	..................LANHHADM.MEVdgdV..EIPQNKAM.VLRGHESEVFI
  178-  201 (23.39/ 8.48)	CAWNPVN.........dlLASGSGDSTARI...W..NL..................
  205-  233 (20.68/ 6.70)	..................STGSSTQLVLRH...CirEGGQDVP..S....NKDVTS
  234-  274 (47.27/24.18)	LDWNSEG.........tlLATGSYDGFARI..wT..KDGN..LASTLGQHKGPIFA
  275-  303 (35.15/16.21)	LKWNKKG..........nF..........I...L..SAGVDKTTIIWDAHTGE..A
  317-  357 (60.65/32.97)	VDWQSN..........ntFASCSTDMCIHV...C..KLGQDRPVKTFQGHTNEVNA
  358-  399 (63.76/35.01)	IKWDPTG.........slLASCSDDMTLKI...W..SMKQDSCVHDLQAHSKEIYT
  400-  450 (55.32/29.47)	IKWSPTGpgtnnpnanlmLASASFDSTVRL...W..DVERGVCIHTLTRHQEPVYS
  451-  491 (56.41/30.18)	VAFSPDG.........rhLASGSFDKCVHI...W..NTQTGALVHSYRG.TGGIFE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00380 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KLAHQQAAGAGSASGTQGPQPGSTKNGEGGTAANGEENGAHALANHHADMMEVDGDVEIPQNKA
102
165










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
10
16