<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00379

Description Uncharacterized protein
SequenceMFNQLLHAVESLAQPPRASQDSSAPAEEAPARPSLDSLGNIRTSLSSSSHLAESALSTLKKTLVAQRPASPANAQSPNQSPGPSATSSPKPRPATRTTLEDRLRAKLAKGDASIAASPSGSSRASPTPTSSTDHPLAPSSRRSSNADVPVVKGPPNPLSPASTPLPDSPMVSPSIEPPLSLDASVSGISCPLPERMEQPAQSELEVPAPETQGETQEETQTTAYELPPTVSTDSTSSSEAVQDTAEEPLHSDNTHANPVAEISAVPLKEPTTAPSEPEQSAAEEDASHPEPPSPVVSTEPSIAVDVPAEEQSEAPPEDGPSIHVPARSQHSEEASDKAEPAVVESSTLTTPDAVTTAEVNISDAAPPRASIDIPSRIATPGMKESERADVEALQKRLKLVEQRFADVSTSFKRLQAEKLAADRVLRELTSVESVTEVDALRDFLQNMALKNEMAQDEIRRLNGKLTRQDERIEELRDIHRLESKSQSEQIDKLKAQVEEAEKLLKAALSVNSQVEEESAKRKAEIERLQVELDRANGNAKDEEEKRTKAIALLKTVRQKLVKAEKERDDAVKEVGSLKEAEKTEREKEKAERARLQGEIEKAQAEKETAIQGIKAQFDKELAAMKDRHEKELAALRGQFELEAITTKTTHVREMENKKARISDLENTVRTLSREKDELFDQLQMRQAELESSQSALELLQGQTTELQFQLREANDRIALLQEEFSDVRHEQHMNVQSPGPSADDVARLLAAAESKYESKLGDLRRRLADAERERDESEARWSKRFAERAKEVEELKAQVASSQKSKEEESEGVHALHAEIDSLKADIRSYQRQIAALHTQLEKAAEVEVAAKAQLAEISSKAADLQQYIDESKNREAQLRVQNKTLREELRKVQSSVALLEKQRNPGVGYWASRNESTSEIKSPRSSISDIARETPSRPSTPSTVKSDEEVNFEYLRNVILQFLEHKEMRPHLWIGLCKLFISKNLAHNGAHSIETDISNSVLVLFRDYPGDPSLQAYIKQAIEDSILSLPIFLTTFLAAAQSPDLHNAATLDMLCRVILDHHYASGMPTIGSLVSYGEPTSRLMNTIQNAMALLRTAYNLPMSHFHQLTTSASELLILLLSCVTDVSQIPTTQATMHFVDANELLQNPRLPAEARSVLEAFAFSLSLLLGDDAKVAREAQMMHTLQHALGKSDAVLGASSETDIVTCTLLLNHLIIHRATDFGSGDGQHAVAILVALLRWSSWSPATFYSQLIISALTCLAQSIGPTGPTRTSSIWRAFTIGRLPHLLAMFQKSAQSEGIAEADWVSRSADAEDCCEAHTEQHTALQFSLPAILHRTDLLEKIDSYGQAGGSDSASDKSMLQVGLVEQSVVATINPNLSNDFHPRMVSEAQEAGLDLPGYFEAKLSPEASPEDIEVLLYRAWKDPCCHASFAEVVVKTKQRFTTSTKNVDTETLSLVCKMLCKHEMALDMLSLHAKITDLVAHALAFVEDYDCETIGDPQTAVTHLGDVVLFVEATIARFNLATQSFRVGDRQLNSEFLRTAGMNHRADVLKDEDQTAFNAWIKALFDLGSEGIEDNILRATHPKCMERKMDKEVLSNGISYFLGPLLNWTLAGVIRYLLFEIQRRGVRSADSQVPLMLGTAGAHWPDQACQIVSNALAAARAGRAVALDTDRCLLLCPPTKFLTAIFHELFLTATMEMDVPRRIATFVLTTPRPPRSPPLLPIFLHLVLPSLVAAAEGLSPTEQTIRAEFLVAVISSSLTAALHLEWAMLTTCGEERYVLGQSVTSMARRLAGDLKRRGTGPTATMVLQRLSAMQPFVANFPTFAAEI
Length1830
PositionTail
OrganismPycnoporus cinnabarinus (Cinnabar-red polypore) (Trametes cinnabarina)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Polyporaceae> Trametes.
Aromaticity0.04
Grand average of hydropathy-0.375
Instability index55.83
Isoelectric point5.26
Molecular weight200728.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00379
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     382.89|      63|      66|      66|     128|       1
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   13-   55 (52.68/20.98)	.........AQP.............PR.......ASQDS.SAPAEEAP....A..RPSL.DSL......GN..IRTSLSSS....SH.L.......AESA
   66-  128 (103.72/49.41)	QR.PASPANAQS.............PN.......QSPGP.SATSSPKP.RPAT..RTTLEDRLRAKLAKGDASIAASPSGS....SR.A.......SPTP
  133-  193 (69.66/30.43)	DH.PLAPSSRRS.............SNadvpvvkGPPNPlSPASTPLPdSPMV..SPSIEPPL.........SLDASVSGI....S..........CPLP
  197-  251 (41.88/14.96)	....................................EQP.AQSELEVP.APET..QGETQEETQTTAYELPPTVSTDSTSS....SE.AvqdtaeePLHS
  252-  326 (69.58/30.39)	DNtHANPVAEISavplkepttapsePE.......QSAAE.EDASHPEP..PSP..VVSTEPSIAVDVPAEEQSEAPPEDGP....SI.H.......VPA.
  327-  380 (45.38/16.91)	RS.QHSE...................................EASDKA.EPAVveSSTLTTPDAVTTAEVNISDAAPPRASidipSRiA.......TP..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     390.18|      66|      66|     440|     505|       2
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  388-  440 (39.82/19.50)	ADVEALQKRLK......lveQ.RF.A.............DvstSFKR.LQAeKLA........AD.....RV..LRELTSVES.........VTEVD...AL.
  441-  494 (73.96/43.44)	.............RDFL...Q.NM.AL.K.NEM..A..QD...EIRR.LNG.KLT..R.....QDE....RIEELRDIHRLES......KSQSEQID...KLK
  495-  572 (51.08/27.39)	AQVEEAEKLLKaA...L...SvNS.QV.E.EES..AkrKA...EIER.LQV.ELD..RangnaKDE....EEKRTKAIALLKTvrqklvKAEKERDD...AVK
  575-  628 (41.95/20.99)	GSLKEAEKTER.EKEKA...E.RA.RL.Q.GEIekA..QA...EKETaIQG.IKA..Q.....FDK....ELAAMKDRH........................
  629-  683 (40.86/20.23)	......EKEL..............aAL.R......G..QF...ELEA.ITT.KTThvR.....EMEnkkaRISDLENTVRTLS......REKDELFD...QLQ
  684-  749 (61.51/34.71)	MRQAE....LEsSQSAL...E.LL.QG.Q.TTE..L..QF...QLRE.AND.RIA..L.....LQE....EFSDVRHEQHMNV......QSPGPSADdvaRLL
  750-  796 (49.86/26.54)	AAAE.......................sK.YES..K..LG...DLRR.RLA.DAE..R.....ERD....E.SEARWSKRFAE......RAK..EVE...ELK
  797-  824 (31.14/13.41)	AQVASSQK.....................sKE........................................EESEGVHALHA...........EID...SLK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     257.91|      61|      62|    1010|    1070|       3
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  936-  987 (54.64/29.96)	......................P.......SRPS..TPSTVKSDEE..VNFEYLRNVILQFLEHKEmRPH...............LW.IG......L.CKLFisknLA
  988- 1061 (88.05/53.25)	HNGAHSIETdisnsvlvlfrdyP.......GDPS..LQAYIKQAIE..DSILSLPIFLTTFLAAAQ.SPD...............LHNAAT..LDML.CRVI....LD
 1062- 1126 (62.68/35.57)	HHYASGMPT..............igslvsyGEPTsrLMNTIQNAMAllRTAYNLP..MSHF.......HQ...............LTTSASelLILL.LSCV....TD
 1127- 1213 (52.55/28.50)	...VSQIPTtqatmhfvdanelL.......QNPR..LPAEARSVLE..AFAFSLSLLLGDDAKVAR.EAQmmhtlqhalgksdavLGASSE..TDIVtCTLL....LN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00379 with Med5 domain of Kingdom Fungi
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