<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00360

Description Uncharacterized protein
SequenceMAENEITHSQGQLVLPSPPRLIVAIAIDGKRSSKYVVRWALDKFVPQGEVLFKLLHVRPRITTVPTPMGNSIPLSQVREDVAAAYKKEMEWQTTEMLLPYKKMCSQRKVQVEVMLIESDDVENAIAEEVNKSAISKLVIGAASCGIFTRKPKKHNLSSRISACTPSFCTVFAVSKGKLSSIRPSDLESSASIKDDSSDTSCSAKSSTSYTSSSRGDTSSVTSHSHLHSPSLPMQHFKALSTAKLSTQANHSRCQSLQIEEGDETDNGFEFKSTVRRTSSVQSLITDAQSWISDQASTSDMLTDYPSSESQANLNFELEKLRIELRHARGMYAMAQSETMDASRKLNNLKERQLEEAMKLKDVKSKEQRAEELARQEQEKHHAAKTEAAYVKDCAEREASQRKEAEMKALHDAKEKEKLEDALSGQALQYQIFSWEEIVSATSSFSESLKIGMGAYGTVYKCSMHHTDVAVKVLHSKESHQSKQFQQELEILSKVRHPHLLLLIGACPDHGCLIYEYLENGSLEDRLLRRNDTLPIPWFARFRIAWEVASALVFLHNSKPKPIIHRDLKPANILLDHNYVSKIGDVGISTMLNDDPTITTKDNGTGPVGTLCYMDPEYQRTGQNSPKSDVYAFGMVILQLLTAKPAVALTHTVERAIEEGSLVEILDEEAGDWPLEETRELAMLGLSCAELRRRDRPDLKDEVLPKLEKLKKIADKARDAASNVKISPPSHFICPILKDVMADPYVAADGYTYDRTAIEKWLEENDKSPMTNLPLPHKNLIPNYTLLSAITEWKSRESGDESRCRNV
Length806
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.488
Instability index46.75
Isoelectric point6.24
Molecular weight90205.41
Publications
PubMed=24919147

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00360
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.82|      49|     361|     314|     369|       1
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  314-  369 (66.01/65.95)	NFELEKLRiELrharGMYAMAQSETMDASRklNNLKERQLEEAMKLKDVKSKEQRA
  671-  719 (82.82/57.69)	DWPLEETR.EL....AMLGLSCAELRRRDR..PDLKDEVLPKLEKLKKIADKARDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.81|      63|     361|     100|     185|       2
---------------------------------------------------------------------------
  100-  185 (88.67/112.35)	YKkmCSQRKVQVEVMLIESDDVENAIAEEVNKSAISK.......LVIGaascgiftrkpkkhnlssrisACTPSFCTVFA.VSKGKLSS..IRPSD
  459-  531 (95.14/68.71)	YK..CSMHHTDVAVKVLHSKESHQSKQFQQELEILSKvrhphllLLIG.....................ACPDHGCLIYEyLENGSLEDrlLRRND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.60|      59|     707|      17|      79|       3
---------------------------------------------------------------------------
   17-   79 (93.63/82.40)	SPP.RLIVAIaIDGKRSSKYVvrwALDKFVPQGEVLFKLLHVRPR..ITTVPTPMGNSIP....LSQVRE
  726-  791 (93.97/67.94)	SPPsHFICPI.LKDVMADPYV...AADGYTYDRTAIEKWLEENDKspMTNLPLPHKNLIPnytlLSAITE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00360 with Med32 domain of Kingdom Viridiplantae
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