<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00354

Description Uncharacterized protein
SequenceMKRCQARGEAPAAWSAEVARCVVSRGLELPSAELGQAVVARLSSGFGEPSLWKFLDHAMASRLISSLHALCLLTPRHAYSLSLTLVLSCRQAQPEAYRLYLDLLARYTFSPEDFPTKASRDKIVRAIDADLQFSRIYGINVRELGHTLVIFFFNAIVSLIDSTMDDWGLQIASMGGLCGSFESMEHHQRNVGIRGSEDNKRSGHREYIRNMNSLIAMEVLENLTRSRKALALLRLIHMNMPDKFNELLQRLQFLETYKLPSPNLISAKEVLARLSSNIHKVLAFESDLKRSFIGMFLNIRSIKSVPYSDSGSALSACWAPFDIYVETAMDGRLLPVTSASAILTELIFSLQALNRASWQDTFLALWLSALRLVQRERDPPEGPVPHLEARLCILLCIVPLAITGVLMNDVDLSSTSSCDLSASILSDPGHGHKIDEKVHGLMRNGLISSLQLLGQFSGLLHPPELVQDAANSAAAKAANASSKQMRGNDSIGVADHDVLVKCGGNMRHLIVEACIARRLVDTSAYFWPGYVLTSVLSIPDSSMKEMSPWSVFMEGGALTASLVSSLVATPATSLAETEKLYNVALNGSNEEKSAAATIMCGASLSRGWNIQEHVVKFVVKLLSPPVPSGHNGPHSHFVDYMPMLSALLFGASSIDTVHILSLHGVVPEVAAALMPLCELYGSLNPLSSSESRTSEEPSVYMVFSAAFLFLLRLWKFYKPPVEIGAIGADLTLEFLMLLHNSRKSLASHDSSPQNEVNSSMNQTFSMSDEPEYIDNYPRLRAWYCQNKICIASPLSGLCSGSPVHQVANRILSMIYSKMTRSTSSSGNSSTTPPNSGLGGSPTSAGEEPHQRPVLCAWEVLEAIPFVLEAILSACTYGRLSSRDLTTGLRDLIDFLPASLATIISYFSAEVTRGIWGPVPMNGIDWPSPTQAIQSVESEIKEILAAAGVNTPSYPPGVEPMLPLPMAALVSLTITFKLDKSLEYILAVAGPAMEDCASYCPWPSMPIIGSLWAQKVRRWHNFIVVSCSRSVFRQNKEALAQLVRSCFTSFLGPLDDLNRLLTNQPCLNGLLGNKISALGVPPSIAPGFLFLRSSRFIQDKEYLSDTIIKLVVEYGSKLATRCPETSSARLKSGQASLSLASARIKEVGLLGASLLCSAGGLHSAQELLRETIPTWLLTTREETHGEGGFVSRMFEGYALAYLVYLTGTFACGIRSRAAPWAYSRRPQIIGMHMDFLAGVLGGNMSIGCGPVMWKAYVSCLVGLVVSFAPAWVREVKHETLVRLARGLWGWHECELALSLLERGGFATMGPLAEFFSVMD
Length1318
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.08
Grand average of hydropathy0.132
Instability index48.02
Isoelectric point6.63
Molecular weight143856.52
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00354
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     982.78|     255|     267|     253|     519|       1
---------------------------------------------------------------------------
   13-  240 (283.36/162.88)	.................................AWSAEVARCVVSR....GLELPSAElgqaVVARLSS............GFGEPSLWK....FLDHAMASRLISSLHALCLLTpRHAYSLSlTLVLSCRQAQPEAY..RL.YLDLLARYTF.....SPE.DFPTKASRDKIVRAIdADLQFSRIYgINVRELGHTLVI..FFFNAIVS......LIDSTMDDW.............GLqIASMgGLCGSFESMEHH....QRNVGIRGSEDNKRSGHReyIRNMNSlI....AM...EVLENLTRSRKALALL..RLIHMNM
  253-  519 (396.20/257.48)	FLETYKLPSpnLISAKE.VLARLS..SNIHKVLAFESDLKRSFIGM....FLNIRSIK....SVPYSDS............GSALSACWAPFDIYVETAMDGRLLPVTSASAILT.ELIFSLQ.ALNRASWQDTFLAL..WLSALRLVQRERD.....PPEGPVPHLEARLCILLCI.VPLAITGVL.MNDVDLSSTSSC..DLSASILSdpghghKIDEKVHGLMRN..........GL.ISSL.QLLGQFSGLLHPpelvQDAANSAAAKAANASSKQ..MRGNDS.I....GVADHDVLVKCGGNMRHLIVE..ACIARRL
  526-  794 (303.22/175.38)	FWPGYVLTS..VLSIPDsSMKEMSpwSVFMEGGALTASLVSSLVATpatsLAETEKLY....NVALNGSneeksaaatimcGASLSRGWNIQEHVVKFVV..KLLSPPVPSG...............HNGPHSHFVDYmpMLSALLFGASSIDtvhilSLHGVVPEVAAAL.MPLCE.LYGSLNPLS.SSESRTSEEPSVymVFSAAFL..............FLLRLwkfykppveiGA.IGA..DLTLEFLMLLH.........NSRKSLASHDSSPQ..NEVNSS.MnqtfSMSDEPEYIDNYPRLRAWYCQnkICIASPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.50|      28|     371|     887|     916|       3
---------------------------------------------------------------------------
  887-  916 (44.18/34.12)	GLrdLIDFLPASLATIISYFSAEVTRGIWG
 1261- 1288 (50.32/32.10)	GL..VVSFAPAWVREVKHETLVRLARGLWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.07|      51|     162|    1021|    1081|       7
---------------------------------------------------------------------------
 1027- 1081 (78.64/73.10)	SRsVFrqNKEALAQLVR.....SC.FTSFLGPLDDLNR...LLTNQPCLNGLLGNKISaLGVPP
 1190- 1249 (82.43/48.13)	SR.MF..EGYALAYLVYltgtfACgIRSRAAPWAYSRRpqiIGMHMDFLAGVLGGNMS.IGCGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00354 with Med33 domain of Kingdom Viridiplantae
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